Basic Information
Locus ID:
Cgl07G2017
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
Endochitinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 21646973 | 21648481 | - | Cgl07G2017 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.25 | 45,708.16 Da | 61.21 | 48.27 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00325 | chitinase_GH19 | 183 | 412 | 2.67703E-112 | - |
| CDD | cd00035 | ChtBD1 | 122 | 159 | 1.75961E-9 | - |
| CDD | cd00035 | ChtBD1 | 25 | 63 | 1.69723E-10 | - |
| Pfam | PF00187 | Chitin recognition protein | 122 | 159 | 3.2E-8 | IPR001002 |
| Pfam | PF00187 | Chitin recognition protein | 25 | 62 | 8.2E-10 | IPR001002 |
| Pfam | PF00182 | Chitinase class I | 182 | 412 | 1.5E-127 | IPR000726 |
| SUPERFAMILY | SSF57016 | Plant lectins/antimicrobial peptides | 25 | 72 | 2.36E-8 | IPR036861 |
| SUPERFAMILY | SSF53955 | Lysozyme-like | 179 | 419 | 6.47E-106 | IPR023346 |
| SUPERFAMILY | SSF57016 | Plant lectins/antimicrobial peptides | 122 | 169 | 4.45E-7 | IPR036861 |
| Gene3D | G3DSA:1.10.530.10 | - | 182 | 413 | 2.0E-120 | - |
| Gene3D | G3DSA:3.30.60.10 | - | 23 | 64 | 3.4E-10 | IPR036861 |
| Gene3D | G3DSA:3.30.60.10 | - | 121 | 161 | 1.9E-8 | IPR036861 |
| Gene3D | G3DSA:3.30.20.10 | Endochitinase, domain 2 | 265 | 321 | 2.0E-120 | - |
| SMART | SM00270 | ChitinBD_3 | 122 | 159 | 2.6E-8 | IPR001002 |
| SMART | SM00270 | ChitinBD_3 | 25 | 62 | 3.3E-10 | IPR001002 |
| ProSiteProfiles | PS50941 | Chitin-binding type-1 domain profile. | 23 | 64 | 9.846601 | IPR001002 |
| ProSiteProfiles | PS50941 | Chitin-binding type-1 domain profile. | 120 | 161 | 9.344389 | IPR001002 |
| ProSitePatterns | PS00026 | Chitin recognition or binding domain signature. | 132 | 151 | - | IPR018371 |
| ProSitePatterns | PS00026 | Chitin recognition or binding domain signature. | 35 | 54 | - | IPR018371 |
| ProSitePatterns | PS00773 | Chitinases family 19 signature 1. | 200 | 222 | - | IPR000726 |
| ProSitePatterns | PS00774 | Chitinases family 19 signature 2. | 325 | 335 | - | IPR000726 |
| PRINTS | PR01217 | Proline rich extensin signature | 65 | 86 | 8.4E-12 | - |
| PRINTS | PR01217 | Proline rich extensin signature | 107 | 124 | 8.4E-12 | - |
| PRINTS | PR01217 | Proline rich extensin signature | 88 | 104 | 8.4E-12 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G12500.1 | basic chitinase. encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. | 0 |
| RefSeq | XP_018856906.1 | endochitinase 2-like [Juglans regia] | 0 |
| P36361 | Endochitinase CH5B OS=Phaseolus vulgaris OX=3885 PE=3 SV=1 | 0 | |
| TrEMBL | B0ZC08 | Chitinase class I OS=Casuarina glauca OX=3522 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology