Basic Information
Locus ID:
Cgl07G2004
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
Endochitinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 21589990 | 21591630 | - | Cgl07G2004 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.12 | 41,673.48 Da | 57.81 | 48.48 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06921 | ChtBD1_GH19_hevein | 24 | 62 | 2.56927E-9 | - |
| CDD | cd06921 | ChtBD1_GH19_hevein | 67 | 104 | 7.70294E-10 | - |
| CDD | cd00325 | chitinase_GH19 | 143 | 372 | 3.74912E-113 | - |
| Pfam | PF00182 | Chitinase class I | 142 | 372 | 3.5E-128 | IPR000726 |
| Pfam | PF00187 | Chitin recognition protein | 67 | 104 | 2.1E-9 | IPR001002 |
| Pfam | PF00187 | Chitin recognition protein | 25 | 62 | 1.2E-10 | IPR001002 |
| SUPERFAMILY | SSF101447 | Formin homology 2 domain (FH2 domain) | 121 | 129 | 4.45E-6 | - |
| SUPERFAMILY | SSF53955 | Lysozyme-like | 139 | 379 | 2.31E-106 | IPR023346 |
| SUPERFAMILY | SSF57016 | Plant lectins/antimicrobial peptides | 67 | 115 | 2.09E-9 | IPR036861 |
| SUPERFAMILY | SSF57016 | Plant lectins/antimicrobial peptides | 25 | 66 | 4.19E-9 | IPR036861 |
| Gene3D | G3DSA:3.30.60.10 | - | 23 | 65 | 2.5E-11 | IPR036861 |
| Gene3D | G3DSA:3.30.60.10 | - | 66 | 106 | 1.1E-9 | IPR036861 |
| Gene3D | G3DSA:3.30.20.10 | Endochitinase, domain 2 | 225 | 281 | 2.8E-121 | - |
| Gene3D | G3DSA:1.10.530.10 | - | 142 | 373 | 2.8E-121 | - |
| SMART | SM00270 | ChitinBD_3 | 67 | 104 | 4.0E-9 | IPR001002 |
| SMART | SM00270 | ChitinBD_3 | 25 | 62 | 1.9E-10 | IPR001002 |
| PIRSF | PIRSF001060 | Endochitinase | 1 | 67 | 1.9E-6 | IPR016283 |
| PIRSF | PIRSF001060 | Endochitinase | 63 | 379 | 5.3E-118 | IPR016283 |
| ProSiteProfiles | PS50941 | Chitin-binding type-1 domain profile. | 23 | 64 | 9.821739 | IPR001002 |
| ProSiteProfiles | PS50941 | Chitin-binding type-1 domain profile. | 65 | 106 | 9.354334 | IPR001002 |
| ProSitePatterns | PS00774 | Chitinases family 19 signature 2. | 285 | 295 | - | IPR000726 |
| ProSitePatterns | PS00026 | Chitin recognition or binding domain signature. | 35 | 54 | - | IPR018371 |
| ProSitePatterns | PS00773 | Chitinases family 19 signature 1. | 160 | 182 | - | IPR000726 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G12500.1 | basic chitinase. encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. | 0 |
| RefSeq | XP_030942484.1 | endochitinase 2-like [Quercus lobata] | 0 |
| Q39799 | Endochitinase 1 OS=Gossypium hirsutum OX=3635 PE=3 SV=1 | 0 | |
| TrEMBL | B0ZC08 | Chitinase class I OS=Casuarina glauca OX=3522 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology