Basic Information
Locus ID:
Cgl07G1848
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 20162879 | 20173661 | + | Cgl07G1848 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.76 | 204,258.19 Da | 48.19 | 84.24 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1480 | 1894 | 1.06917E-124 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1528 | 1899 | 3.8E-82 | IPR000569 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1472 | 1892 | 1.44E-95 | IPR035983 |
| SUPERFAMILY | SSF48371 | ARM repeat | 82 | 662 | 2.07E-42 | IPR016024 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1770 | 1897 | 4.3E-33 | - |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1420 | 1661 | 9.3E-45 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 192 | 669 | 1.9E-51 | IPR011989 |
| SMART | SM00119 | hect_3 | 1491 | 1899 | 4.5E-87 | IPR000569 |
| SMART | SM00185 | arm_5 | 348 | 386 | 9.8 | IPR000225 |
| SMART | SM00185 | arm_5 | 222 | 263 | 39.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 305 | 345 | 61.0 | IPR000225 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1504 | 1899 | 55.746323 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1057 | 1071 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 970 | 1025 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1083 | 1117 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1147 | 1171 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 76 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 77 | 131 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1147 | 1165 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 663 | 719 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 663 | 680 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1292 | 1314 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 693 | 719 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1290 | 1314 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 969 | 1122 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 141 | - | - |
| Coils | Coil | Coil | 100 | 128 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38600.1 | HEAT repeat ;HECT-domain (ubiquitin-transferase). encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. | 0 |
| RefSeq | XP_030943574.1 | E3 ubiquitin-protein ligase UPL3 [Quercus lobata] | 0 |
| Q6WWW4 | E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana OX=3702 GN=UPL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6QNN0 | HECT-type E3 ubiquitin transferase OS=Carpinus fangiana OX=176857 GN=FH972_005234 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology