Basic Information
Locus ID:
Cgl07G1709
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 18544296 | 18545918 | - | Cgl07G1709 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.38 | 33,248.20 Da | 60.80 | 82.00 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 177 | 219 | 2.42088E-22 | - |
| Pfam | PF13639 | Ring finger domain | 177 | 219 | 7.8E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 158 | 225 | 1.72E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 141 | 226 | 1.8E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 178 | 218 | 1.3E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 178 | 219 | 11.66311 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 101 | 128 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G68180.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_023916049.1 | probable E3 ubiquitin-protein ligase RHC1A [Quercus suber] | 0 |
| O22197 | Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N6QPK0 | RING-type domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_005527 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology