halophFGD

Basic Information

Locus ID: Cgl07G1362

Species & Taxonomic ID: Casuarina glauca & 3522

Genome Assembly: GCA_028551395.1

Description: f-box protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr07	13700939	13704626	-	Cgl07G1362

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.18	51,799.04 Da	41.27	79.70	-0.28

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF52047	RNI-like	268	412	3.81E-7	-
SUPERFAMILY	SSF81383	F-box domain	228	262	4.36E-5	IPR036047
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	233	448	1.5E-11	IPR032675

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G26000.1	Ribonuclease inhibitor.
RefSeq	XP_030960742.1	F-box protein SKIP14 [Quercus lobata]
Swiss-Prot	Q9LU91	F-box protein SKIP14 OS=Arabidopsis thaliana OX=3702 GN=SKIP14 PE=1 SV=1
TrEMBL	A0A5N6R2C8	F-box protein SKIP14-like OS=Carpinus fangiana OX=176857 GN=FH972_009303 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg17723, jg34553, jg5553, jg7355, jg9550
Aizoaceae	Mesembryanthemum crystallinum	2	gene_3545, gene_4286
Amaranthaceae	Atriplex hortensis	2	Ah013828, Ah025222
Amaranthaceae	Beta vulgaris	2	BVRB_6g144370, BVRB_6g151610
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg41964, Sbi_jg42737, Sbi_jg45362, Sbi_jg48173
Amaranthaceae	Salicornia europaea	2	Seu_jg11225, Seu_jg27517
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00002573, GOSA_00019458
Amaranthaceae	Suaeda glauca	2	Sgl35103, Sgl40482
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000002344, gene:ENSEOMG00000003448 ... gene:ENSEOMG00000003506, gene:ENSEOMG00000012646, gene:ENSEOMG00000024445, gene:ENSEOMG00000024543
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.6AG0003600, CQ.Regalona.r1.6AG0012710 ... CQ.Regalona.r1.6BG0003600, CQ.Regalona.r1.6BG0013450
Anacardiaceae	Pistacia vera	7	pistato.v30023880, pistato.v30024130, pistato.v30114380 ... pistato.v30183540, pistato.v30218020, pistato.v30227990, pistato.v30282540
Apiaceae	Apium graveolens	2	Ag5G01944, Ag6G00269
Arecaceae	Cocos nucifera	3	COCNU_02G013140, COCNU_03G002670, scaffold020982G000040
Arecaceae	Phoenix dactylifera	5	gene-LOC103697618, gene-LOC103715179, gene-LOC103717348 ... gene-LOC103721133, gene-LOC103723311
Asparagaceae	Asparagus officinalis	3	AsparagusV1_02.979.V1.1, AsparagusV1_06.529.V1.1 ... AsparagusV1_09.216.V1.1
Asteraceae	Flaveria trinervia	4	Ftri11G11895, Ftri13G12231, Ftri3G05127, Ftri9G27197
Brassicaceae	Arabidopsis thaliana	3	AT2G01620.1, AT3G26000.1, AT3G27290.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10004158m.g.v1.0, Thhalv10004262m.g.v1.0 ... Thhalv10004706m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp2g13070.v2.2, Sp2g15220.v2.2, Sp2g16450.v2.2
Brassicaceae	Brassica nigra	5	BniB02g066580.2N, BniB04g008120.2N, BniB04g009540.2N ... BniB04g013590.2N, BniB07g035850.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq02G1952, Ceq07G1286, Ceq09G0832
Casuarinaceae	Casuarina glauca	3	Cgl02G2025, Cgl07G1362, Cgl09G0904
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno07g13030, gene.Cymno09g02720
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate04g23750, gene.Thate05g23790
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-10352
Nitrariaceae	Nitraria sibirica	5	evm.TU.LG03.1295, evm.TU.LG03.703, evm.TU.LG05.196 ... evm.TU.LG06.725, evm.TU.LG06.726
Plantaginaceae	Plantago ovata	3	Pov_00027803, Pov_00031193, Pov_00041539
Plumbaginaceae	Limonium bicolor	6	Lb0G37662, Lb1G00516, Lb1G03062, Lb1G03063, Lb6G31763 ... Lb7G35306
Poaceae	Echinochloa crus-galli	6	AH08.1599, AH09.1365, BH08.1648, BH09.1547, CH08.1791 ... CH09.1664
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_4AG0312960, gene-QOZ80_4BG0344120
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.2HG0176810.1, HORVU.MOREX.r3.2HG0193610.1
Poaceae	Lolium multiflorum	3	gene-QYE76_031499, gene-QYE76_031976, gene-QYE76_044757
Poaceae	Oryza coarctata	4	Oco07G009000, Oco08G008940, Oco15G008700, Oco16G008200
Poaceae	Oryza sativa	3	LOC_Os04g40910.1, LOC_Os08g13900.1, LOC_Os08g33140.1
Poaceae	Paspalum vaginatum	2	gene-BS78_06G140300, gene-BS78_07G140000
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0206858, Pt_Chr0307219
Poaceae	Sporobolus alterniflorus	8	Chr16G014260, Chr17G013630, Chr23G010230, Chr25G009430 ... Chr26G009510, Chr28G005630, Chr29G005590, Chr30G009290
Poaceae	Thinopyrum elongatum	2	Tel2E01G596700, Tel2E01G743600
Poaceae	Triticum dicoccoides	4	gene_TRIDC2AG049830, gene_TRIDC2AG063010 ... gene_TRIDC2BG052830, gene_TRIDC2BG066930
Poaceae	Triticum aestivum	7	TraesCS2A02G320200.1, TraesCS2A02G438500.1 ... TraesCS2B02G363000.1, TraesCS2B02G458800.1, TraesCS2D02G343000.1, TraesCS2D02G435600.1, TraesCS2D02G435900.1
Poaceae	Zea mays	3	Zm00001eb079200_P001, Zm00001eb179340_P002 ... Zm00001eb425190_P001
Poaceae	Zoysia japonica	4	nbis-gene-16960, nbis-gene-36921, nbis-gene-3921 ... nbis-gene-7359
Poaceae	Zoysia macrostachya	3	Zma_g19940, Zma_g21494, Zma_g24083
Portulacaceae	Portulaca oleracea	3	evm.TU.LG13.101, evm.TU.LG13.868, evm.TU.LG21.536
Posidoniaceae	Posidonia oceanica	3	gene.Posoc01g07570, gene.Posoc05g01280, gene.Posoc08g00360
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_15_RagTag.222, evm.TU.Scaffold_15_RagTag.832
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-23192, nbisL1-mrna-26451, nbisL1-mrna-27020 ... nbisL1-mrna-27207
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-11339, nbisL1-mrna-12315, nbisL1-mrna-17972
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-14679, nbisL1-mrna-15569, nbisL1-mrna-17547
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000001l.140, evm.TU.utg000001l.457 ... evm.TU.utg000013l.103
Rhizophoraceae	Kandelia obovata	3	Maker00002679, Maker00004700, Maker00006537
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-11202, nbisL1-mrna-11585, nbisL1-mrna-7013
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-15947, nbisL1-mrna-17691, nbisL1-mrna-2722
Salicaceae	Populus euphratica	5	populus_peu01168, populus_peu01172, populus_peu07653 ... populus_peu21191, populus_peu21696
Solanaceae	Lycium barbarum	5	gene-LOC132613610, gene-LOC132621352, gene-LOC132622898 ... gene-LOC132624820, gene-LOC132625877
Solanaceae	Solanum chilense	4	SOLCI000008400, SOLCI000766300, SOLCI002207600 ... SOLCI004252400
Solanaceae	Solanum pennellii	4	gene-LOC107002760, gene-LOC107009200, gene-LOC107011861 ... gene-LOC107015555
Tamaricaceae	Reaumuria soongarica	1	STRG.19637_chr07_-
Tamaricaceae	Tamarix chinensis	3	TC03G0527, TC04G0105, TC04G0418
Zosteraceae	Zostera marina	2	Zosma01g08750.v3.1, Zosma05g08000.v3.1