Basic Information
Locus ID:
Cgl07G1358
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 13673054 | 13681166 | - | Cgl07G1358 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.01 | 147,904.73 Da | 36.64 | 110.27 | 0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03250 | ABCC_MRP_domain1 | 583 | 788 | 3.14986E-80 | - |
| CDD | cd03244 | ABCC_MRP_domain2 | 1064 | 1284 | 5.87005E-118 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 275 | 558 | 7.2722E-95 | IPR044746 |
| Pfam | PF00005 | ABC transporter | 1083 | 1231 | 1.3E-29 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 610 | 740 | 7.4E-15 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 275 | 537 | 1.5E-22 | IPR011527 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1058 | 1290 | 1.29E-64 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 609 | 803 | 9.47E-48 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 888 | 1048 | 1.01E-7 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 267 | 564 | 1.44E-29 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1049 | 1302 | 5.0E-77 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 836 | 991 | 1.1E-10 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 602 | 833 | 1.1E-62 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 262 | 569 | 1.9E-45 | IPR036640 |
| SMART | SM00382 | AAA_5 | 1092 | 1275 | 2.1E-11 | IPR003593 |
| SMART | SM00382 | AAA_5 | 614 | 788 | 2.2E-10 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 562 | 811 | 19.634644 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 275 | 550 | 33.257389 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1066 | 1300 | 17.200348 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 890 | 984 | 11.898961 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 713 | 727 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_030960733.1 | putative ABC transporter C family member 15 [Quercus lobata] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6R3Q4 | ABC-type xenobiotic transporter OS=Carpinus fangiana OX=176857 GN=FH972_009307 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology