Basic Information
Locus ID:
Cgl07G1354
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 13617942 | 13623749 | - | Cgl07G1354 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.74 | 153,919.06 Da | 37.81 | 109.28 | 0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03244 | ABCC_MRP_domain2 | 1117 | 1337 | 1.49245E-119 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 215 | 498 | 2.75684E-94 | IPR044746 |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 816 | 1094 | 3.65778E-67 | IPR044726 |
| Pfam | PF00664 | ABC transporter transmembrane region | 836 | 1045 | 1.1E-20 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 550 | 680 | 2.8E-14 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 216 | 477 | 2.1E-22 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1136 | 1284 | 6.1E-30 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 550 | 730 | 3.66E-43 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1110 | 1345 | 9.94E-65 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 206 | 503 | 2.49E-29 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 816 | 1099 | 7.59E-41 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 202 | 509 | 1.3E-43 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1102 | 1355 | 6.9E-78 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 779 | 1100 | 3.5E-44 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 549 | 760 | 5.3E-55 | IPR027417 |
| SMART | SM00382 | AAA_5 | 1145 | 1338 | 2.7E-9 | IPR003593 |
| SMART | SM00382 | AAA_5 | 554 | 717 | 5.9E-11 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1119 | 1353 | 16.973593 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 502 | 740 | 17.000269 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 818 | 1047 | 28.901281 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 215 | 490 | 32.616615 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 653 | 667 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_042979730.1 | putative ABC transporter C family member 15 [Carya illinoinensis] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6R3Q4 | ABC-type xenobiotic transporter OS=Carpinus fangiana OX=176857 GN=FH972_009307 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology