Basic Information
Locus ID:
Cgl07G0960
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 9136942 | 9141590 | - | Cgl07G0960 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.17 | 114,143.78 Da | 46.64 | 105.84 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16452 | SP-RING_like | 261 | 302 | 2.66206E-15 | - |
| Pfam | PF04564 | U-box domain | 260 | 326 | 1.6E-13 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 784 | 1007 | 1.34E-9 | IPR016024 |
| SUPERFAMILY | SSF48371 | ARM repeat | 333 | 420 | 1.5E-7 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 259 | 326 | 1.58E-24 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 428 | 770 | 1.63E-29 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 617 | 845 | 6.4E-15 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 874 | 1021 | 3.7E-9 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 326 | 616 | 1.5E-24 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 256 | 325 | 6.8E-27 | IPR013083 |
| Gene3D | G3DSA:1.20.930.20 | - | 14 | 132 | 8.8E-6 | IPR036537 |
| SMART | SM00504 | Ubox_2 | 260 | 323 | 2.5E-21 | IPR003613 |
| SMART | SM00185 | arm_5 | 399 | 437 | 14.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 893 | 934 | 57.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 438 | 479 | 120.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 562 | 605 | 300.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 939 | 979 | 260.0 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 256 | 330 | 20.196499 | IPR003613 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 263 | 302 | 10.689412 | IPR001841 |
| Coils | Coil | Coil | 511 | 531 | - | - |
| Coils | Coil | Coil | 199 | 229 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76390.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_030960335.1 | U-box domain-containing protein 44-like [Quercus lobata] | 0 |
| Q9SFX2 | U-box domain-containing protein 43 OS=Arabidopsis thaliana OX=3702 GN=PUB43 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N6R4D0 | RING-type E3 ubiquitin transferase OS=Carpinus fangiana OX=176857 GN=FH972_009463 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 1 | pistato.v30167590 |
| Arecaceae | Cocos nucifera | 1 | COCNU_15G006120 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103712369 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0917 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0960 |
| Salicaceae | Populus euphratica | 2 | populus_peu03893, populus_peu34722 |