Basic Information
Locus ID:
Cgl07G0795
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
transcriptional co-repressor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 7618956 | 7632222 | - | Cgl07G0795 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.83 | 80,582.45 Da | 43.09 | 68.25 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 487 | 740 | 2.51684E-47 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 708 | 741 | 0.0051 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 624 | 658 | 5.5E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 532 | 565 | 1.3E-4 | IPR001680 |
| Pfam | PF08513 | LisH | 10 | 36 | 1.3E-7 | IPR006594 |
| Pfam | PF00400 | WD domain, G-beta repeat | 497 | 523 | 0.0031 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 487 | 740 | 3.3E-48 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 475 | 574 | 1.8E-21 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 586 | 741 | 6.1E-29 | IPR015943 |
| SMART | SM00320 | WD40_4 | 526 | 565 | 1.4E-6 | IPR001680 |
| SMART | SM00667 | Lish | 8 | 40 | 0.0018 | IPR006594 |
| SMART | SM00320 | WD40_4 | 661 | 700 | 0.29 | IPR001680 |
| SMART | SM00320 | WD40_4 | 484 | 523 | 1.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 620 | 658 | 6.9E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 702 | 741 | 6.7E-4 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 9.386435 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 491 | 526 | 8.940149 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 627 | 667 | 8.937796 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 709 | 741 | 13.048234 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 491 | 532 | 11.44416 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 533 | 565 | 12.881143 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 533 | 565 | 10.706503 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 709 | 741 | 12.156496 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 510 | 524 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 510 | 524 | 1.1E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 552 | 566 | 1.1E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 728 | 741 | 1.1E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 335 | 398 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 335 | 404 | - | - |
| Coils | Coil | Coil | 79 | 106 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_042988693.1 | transcriptional corepressor LEUNIG_HOMOLOG-like isoform X2 [Carya illinoinensis] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A2I4G286 | transcriptional corepressor LEUNIG_HOMOLOG-like OS=Juglans regia OX=51240 GN=LOC109004057 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology