Basic Information
Locus ID:
Cgl07G0780
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
high mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 7460543 | 7467309 | - | Cgl07G0780 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.13 | 43,018.00 Da | 61.26 | 70.81 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16872 | ARID_HMGB9-like | 37 | 122 | 9.24063E-52 | - |
| CDD | cd01390 | HMGB-UBF_HMG-box | 263 | 327 | 1.09663E-21 | - |
| Pfam | PF00505 | HMG (high mobility group) box | 263 | 330 | 1.8E-16 | IPR009071 |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 40 | 122 | 5.4E-18 | IPR001606 |
| SUPERFAMILY | SSF47095 | HMG-box | 255 | 335 | 3.53E-22 | IPR036910 |
| SUPERFAMILY | SSF46774 | ARID-like | 33 | 136 | 1.24E-29 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 247 | 343 | 3.6E-22 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 28 | 131 | 2.4E-26 | IPR036431 |
| SMART | SM00398 | hmgende2 | 262 | 331 | 3.3E-20 | IPR009071 |
| SMART | SM01014 | ARID_2 | 32 | 122 | 5.7E-29 | - |
| SMART | SM00501 | bright_3 | 36 | 127 | 9.8E-30 | IPR001606 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 263 | 330 | 16.095163 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 35 | 126 | 25.735796 | IPR001606 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 15 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 243 | 270 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 343 | 383 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 367 | 383 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| Coils | Coil | Coil | 312 | 332 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04880.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_018837112.1 | high mobility group B protein 15-like [Juglans regia] | 0 |
| Q9MAT6 | High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N6REM1 | High mobility group B protein 15 OS=Carpinus fangiana OX=176857 GN=FH972_014913 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology