Basic Information
Locus ID:
Cgl07G0603
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 5440917 | 5444370 | - | Cgl07G0603 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.82 | 70,178.96 Da | 45.50 | 92.03 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03000 | NPH3 family | 197 | 404 | 5.1E-44 | IPR027356 |
| Pfam | PF03000 | NPH3 family | 497 | 523 | 8.0E-6 | IPR027356 |
| SUPERFAMILY | SSF54695 | POZ domain | 4 | 100 | 8.63E-8 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 2 | 111 | 1.8E-6 | IPR011333 |
| SMART | SM00225 | BTB_4 | 5 | 107 | 0.0029 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 5 | 71 | 9.289264 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 197 | 547 | 40.590092 | IPR027356 |
| Coils | Coil | Coil | 587 | 607 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G19850.1 | Phototropic-responsive NPH3 family protein. | 0 |
| RefSeq | XP_042977944.1 | BTB/POZ domain-containing protein At3g19850-like [Carya illinoinensis] | 0 |
| Q9LT24 | BTB/POZ domain-containing protein At3g19850 OS=Arabidopsis thaliana OX=3702 GN=At3g19850 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N6R171 | RanBP2-type domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_008720 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg7442 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_25410, gene_25411 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah038420 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g203500 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg14395, Sbi_jg53554 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg10188 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00012574 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl78123 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015711, gene:ENSEOMG00000037522 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0000170, CQ.Regalona.r1.9BG0020950 |
| Apiaceae | Apium graveolens | 2 | Ag5G01809, Ag8G01993 |
| Arecaceae | Cocos nucifera | 2 | COCNU_09G006360, scaffold008549G000160 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103717133, gene-LOC103724294 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.996.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri13G28243 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G50280.1, AT3G19850.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10011386m.g.v1.0, Thhalv10020411m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g37130.v2.2, Sp3g17860.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB07g005030.2N, BniB07g030770.2N, BniB07g050950.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0611 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0603 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno09g00300, gene.Cymno10g10140 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate02g00840, gene.Thate03g03090, gene.Thate05g02520 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.960 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00026945 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G08511 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.2688, BH09.2923, CH09.3134 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0299680, gene-QOZ80_4BG0330350 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0210650.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_047452 |
| Poaceae | Oryza coarctata | 2 | Oco07G019060, Oco08G018330 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g57800.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G280900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0300184 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr23G001080, Chr25G000830, Chr26G018210 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G944800, Tel3E01G129700 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2AG077250, gene_TRIDC2BG084740 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS2A02G553600.1, TraesCS2B02G585400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb066500_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-23186 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.1415, evm.TU.LG21.1258 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc06g10760, gene.Posoc08g06120 |
| Salicaceae | Populus euphratica | 2 | populus_peu06712, populus_peu20598 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132615341, gene-LOC132623965 |
| Solanaceae | Solanum chilense | 1 | SOLCI003358600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107005146 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.26978_chr04_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G2736 |
| Zosteraceae | Zostera marina | 1 | Zosma03g20990.v3.1 |