Basic Information
Locus ID:
Cgl07G0525
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 4731832 | 4738883 | - | Cgl07G0525 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.63 | 51,451.09 Da | 51.79 | 80.60 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 221 | 262 | 1.7E-9 | IPR001841 |
| Pfam | PF13639 | Ring finger domain | 372 | 415 | 1.5E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 368 | 430 | 1.39E-18 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 211 | 262 | 1.17E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 188 | 269 | 2.4E-14 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 350 | 421 | 5.6E-18 | IPR013083 |
| SMART | SM00744 | ringv_2 | 372 | 415 | 0.0084 | IPR011016 |
| SMART | SM00184 | ring_2 | 222 | 263 | 0.083 | IPR001841 |
| SMART | SM00184 | ring_2 | 373 | 414 | 2.6E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 373 | 415 | 12.459772 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 222 | 264 | 10.77793 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G43430.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_050257912.1 | E3 ubiquitin-protein ligase RHA2B-like [Quercus robur] | 0 |
| Q9SI09 | Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana OX=3702 GN=XERICO PE=1 SV=1 | 0 | |
| TrEMBL | A5B787 | RING-type domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_039591 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology