Basic Information
Locus ID:
Cgl07G0379
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 3336547 | 3343742 | - | Cgl07G0379 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.37 | 112,337.37 Da | 43.45 | 110.52 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04564 | U-box domain | 261 | 326 | 2.4E-13 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 651 | 996 | 2.76E-35 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 246 | 327 | 6.8E-19 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 367 | 714 | 5.23E-20 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 237 | 334 | 3.8E-19 | IPR013083 |
| Gene3D | G3DSA:1.20.930.20 | - | 5 | 121 | 2.1E-8 | IPR036537 |
| Gene3D | G3DSA:1.25.10.10 | - | 642 | 975 | 2.6E-37 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 335 | 528 | 1.7E-10 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 529 | 641 | 2.2E-9 | IPR011989 |
| SMART | SM00185 | arm_5 | 670 | 710 | 14.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 799 | 839 | 3.9 | IPR000225 |
| SMART | SM00185 | arm_5 | 533 | 573 | 120.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 405 | 444 | 8.8 | IPR000225 |
| SMART | SM00185 | arm_5 | 872 | 912 | 27.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 755 | 796 | 45.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 574 | 612 | 73.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 713 | 754 | 35.0 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 261 | 324 | 2.6E-17 | IPR003613 |
| SMART | SM00185 | arm_5 | 915 | 956 | 350.0 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 257 | 331 | 15.517124 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 724 | 752 | 8.5924 | IPR000225 |
| Coils | Coil | Coil | 124 | 151 | - | - |
| Coils | Coil | Coil | 59 | 86 | - | - |
| Coils | Coil | Coil | 194 | 214 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_050239540.1 | U-box domain-containing protein 44-like isoform X1 [Quercus robur] | 0 |
| D1FP53 | Putative E3 ubiquitin-protein ligase LIN OS=Medicago truncatula OX=3880 GN=LIN PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N6R091 | RING-type E3 ubiquitin transferase OS=Carpinus fangiana OX=176857 GN=FH972_008405 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg5773 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30235850 |
| Apiaceae | Apium graveolens | 1 | Ag5G02549 |
| Arecaceae | Cocos nucifera | 1 | COCNU_08G000790 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103711617 |
| Asteraceae | Flaveria trinervia | 1 | FtriNA05963 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0368 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0379 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.379 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-1544 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2607 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6116 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.999 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012874 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6400 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-2184 |
| Salicaceae | Populus euphratica | 1 | populus_peu21467 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132609553 |
| Solanaceae | Solanum chilense | 1 | SOLCI003509000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031387 |