Basic Information
Locus ID:
Cgl06G2478
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
ATP-dependent RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 28222888 | 28228449 | + | Cgl06G2478 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.23 | 46,178.80 Da | 37.55 | 97.66 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 249 | 376 | 1.43901E-59 | - |
| CDD | cd18045 | DEADc_EIF4AIII_DDX48 | 38 | 238 | 1.01673E-120 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 61 | 223 | 9.6E-42 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 262 | 367 | 1.3E-27 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 104 | 389 | 5.47E-71 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 241 | 406 | 3.2E-56 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 22 | 240 | 1.4E-65 | IPR027417 |
| SMART | SM00487 | ultradead3 | 55 | 252 | 1.7E-53 | IPR014001 |
| SMART | SM00490 | helicmild6 | 289 | 367 | 4.5E-30 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 36 | 64 | 11.176648 | IPR014014 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 248 | 406 | 22.44455 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 67 | 237 | 26.868898 | IPR014001 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G19760.1 | eukaryotic initiation factor 4A-III. Encodes an RNA helicase that may be a component of the Exon Junction Complex. Subcellular localization is modulated by stress. Under normal conditions it is localized to the nuceloplasm but under hyopoxic conditions it localizes to the nucleolus and splicing speckles. | 0 |
| RefSeq | XP_018812654.1 | eukaryotic initiation factor 4A-3 [Juglans regia] | 0 |
| Q5VNM3 | Eukaryotic initiation factor 4A-III homolog A OS=Oryza sativa subsp. japonica OX=39947 GN=EIF4A3A PE=1 SV=1 | 0 | |
| TrEMBL | A0A2I4DZS6 | eukaryotic initiation factor 4A-3 OS=Juglans regia OX=51240 GN=LOC108984990 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology