Basic Information
Locus ID:
Cgl06G2390
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 27212275 | 27219192 | + | Cgl06G2390 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.75 | 59,437.51 Da | 41.51 | 92.12 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 217 | 511 | 1.67432E-51 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 216 | 252 | 4.5E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 433 | 469 | 0.045 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 301 | 340 | 0.034 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 475 | 511 | 4.0E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 261 | 297 | 1.5E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 211 | 511 | 1.19E-64 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 213 | 512 | 7.1E-69 | IPR015943 |
| SMART | SM00320 | WD40_4 | 385 | 423 | 6.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 343 | 383 | 2.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 213 | 252 | 1.5E-7 | IPR001680 |
| SMART | SM00668 | ctlh | 50 | 107 | 0.0071 | IPR006595 |
| SMART | SM00320 | WD40_4 | 472 | 512 | 3.0E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 427 | 469 | 2.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 300 | 341 | 0.0015 | IPR001680 |
| SMART | SM00320 | WD40_4 | 258 | 297 | 5.1E-8 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 220 | 253 | 11.678087 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 479 | 511 | 11.497408 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 265 | 301 | 11.181047 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 17 | 49 | 8.727461 | IPR006594 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 50 | 107 | 9.110645 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 265 | 306 | 14.518635 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 220 | 253 | 9.757418 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 479 | 511 | 13.883689 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G43920.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_023882709.1 | WD repeat-containing protein WDS homolog isoform X1 [Quercus suber] | 0 |
| Q9FND4 | WD repeat-containing protein WDS homolog OS=Arabidopsis thaliana OX=3702 GN=WDS PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6QHE5 | WD repeat-containing protein 26 OS=Carpinus fangiana OX=176857 GN=FH972_002502 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology