Basic Information
Locus ID:
Cgl06G2372
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 27006654 | 27017738 | - | Cgl06G2372 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.06 | 69,012.76 Da | 52.48 | 58.15 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 154 | 204 | 7.50378E-16 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 302 | 350 | 3.6E-9 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 223 | 285 | 2.0E-15 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 304 | 352 | 5.65E-17 | - |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 579 | 606 | 4.16E-6 | IPR036443 |
| SUPERFAMILY | SSF57850 | RING/U-box | 150 | 232 | 9.89E-18 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 223 | 292 | 1.18E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 148 | 233 | 1.0E-17 | IPR013083 |
| Gene3D | G3DSA:4.10.1060.10 | - | 572 | 606 | 1.1E-5 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 281 | 536 | 1.1E-84 | - |
| SMART | SM00547 | zf_4 | 581 | 605 | 3.4E-6 | IPR001876 |
| SMART | SM00647 | ibrneu5 | 289 | 359 | 0.033 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 223 | 285 | 9.3E-24 | IPR002867 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 154 | 198 | 8.786275 | IPR001841 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 150 | 363 | 51.027115 | IPR044066 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 579 | 606 | 8.862888 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 583 | 602 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 33 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 544 | 577 | - | - |
| Coils | Coil | Coil | 371 | 391 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_035551393.1 | probable E3 ubiquitin-protein ligase ARI8 [Juglans regia] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6P9F685 | RBR-type E3 ubiquitin transferase OS=Juglans regia OX=51240 GN=LOC108982156 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology