Basic Information
Locus ID:
Cgl06G1589
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 18330896 | 18332053 | - | Cgl06G1589 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.13 | 43,129.45 Da | 63.20 | 72.91 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 113 | 156 | 3.83824E-20 | - |
| Pfam | PF13639 | Ring finger domain | 113 | 156 | 2.7E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 93 | 163 | 5.42E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 88 | 164 | 2.5E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 114 | 155 | 4.0E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 114 | 156 | 12.681067 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 279 | 300 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 214 | 238 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 279 | 299 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28890.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_041006326.1 | E3 ubiquitin-protein ligase ATL42-like [Juglans microcarpa x Juglans regia] | 0 |
| Q5XF85 | E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana OX=3702 GN=ATL42 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6A1WGJ6 | E3 ubiquitin-protein ligase ATL42 OS=Morella rubra OX=262757 GN=CJ030_MR2G016328 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology