Basic Information
Locus ID:
Cgl06G1578
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 18212298 | 18215508 | + | Cgl06G1578 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.51 | 33,330.21 Da | 44.80 | 62.91 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 33 | 304 | 7.8E-88 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 190 | 294 | 1.28E-21 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 188 | 306 | 2.4E-44 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 193 | 295 | 25.33749 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 13 | 52 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 141 | 161 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G29080.1 | phytochrome-associated protein 2. phytochrome-associated protein 2 (PAP2) | 0 |
| RefSeq | XP_018848740.1 | auxin-responsive protein IAA27-like [Juglans regia] | 0 |
| Q9ZSY8 | Auxin-responsive protein IAA27 OS=Arabidopsis thaliana OX=3702 GN=IAA27 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6QKN9 | Auxin-responsive protein OS=Carpinus fangiana OX=176857 GN=FH972_003226 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology