Basic Information
Locus ID:
Cgl06G1562
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
proteinaceous RNase P 1, chloroplastic mitochondrial-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 18052341 | 18060436 | - | Cgl06G1562 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.00 | 126,058.31 Da | 47.26 | 73.50 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF17177 | Pentacotripeptide-repeat region of PRORP | 345 | 490 | 2.5E-53 | IPR033443 |
| Pfam | PF17177 | Pentacotripeptide-repeat region of PRORP | 150 | 207 | 6.5E-16 | IPR033443 |
| Pfam | PF16953 | Protein-only RNase P | 533 | 757 | 3.1E-72 | IPR031595 |
| Gene3D | G3DSA:6.10.140.1620 | - | 904 | 998 | 1.1E-18 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 344 | 760 | 2.5E-194 | IPR011990 |
| Gene3D | G3DSA:3.40.50.11980 | - | 549 | 723 | 2.5E-194 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 155 | 205 | 1.8E-11 | IPR011990 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 403 | 437 | 9.393891 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 51 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 278 | 305 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 71 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 766 | 809 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 126 | 151 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32230.1 | proteinaceous RNase P 1. RNase P able to cleave tRNA-like structures involved in the maturation of plant mitochondrial mRNAs. | 0 |
| RefSeq | XP_018805595.1 | proteinaceous RNase P 1, chloroplastic/mitochondrial-like [Juglans regia] | 0 |
| Q66GI4 | Proteinaceous RNase P 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PRORP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6QHD3 | ribonuclease P OS=Carpinus fangiana OX=176857 GN=FH972_003239 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology