Basic Information
Locus ID:
Cgl06G1512
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Short Name:
NTMC2T2.1
Description:
Synaptotagmin-5-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 17254404 | 17261648 | + | Cgl06G1512 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.23 | 54,768.72 Da | 29.04 | 99.38 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 184 | 286 | 1.0424E-25 | - |
| CDD | cd00030 | C2 | 363 | 459 | 1.84341E-27 | - |
| Pfam | PF00168 | C2 domain | 183 | 286 | 1.1E-22 | IPR000008 |
| Pfam | PF00168 | C2 domain | 361 | 459 | 1.3E-25 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 1 | 168 | 1.1E-11 | IPR039010 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 358 | 480 | 8.83E-33 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 180 | 312 | 1.57E-29 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 174 | 310 | 1.3E-31 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 346 | 479 | 2.2E-35 | IPR035892 |
| SMART | SM00239 | C2_3c | 362 | 460 | 5.2E-25 | IPR000008 |
| SMART | SM00239 | C2_3c | 183 | 283 | 3.9E-21 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 343 | 461 | 21.138159 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 1 | 169 | 26.436209 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 163 | 284 | 20.278852 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 426 | 434 | 1.9E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 378 | 390 | 1.9E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 404 | 417 | 1.9E-6 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_018811223.1 | synaptotagmin-5-like isoform X1 [Juglans regia] | 0 |
| Q8L706 | Synaptotagmin-5 OS=Arabidopsis thaliana OX=3702 GN=SYT5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T1QUC5 | Synaptotagmin-5-like OS=Carya illinoinensis OX=32201 GN=CIPAW_04G176300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology