Basic Information
Locus ID:
Cgl06G1252
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
C4-type zinc-finger of DNA polymerase delta
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 12521114 | 12526922 | - | Cgl06G1252 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.80 | 99,497.89 Da | 53.05 | 53.20 | -1.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 369 | 397 | 1.0E-8 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 403 | 431 | 4.8E-5 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 362 | 398 | 1.62E-7 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 400 | 432 | 4.6E-8 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 361 | 399 | 1.6E-16 | - |
| SMART | SM00547 | zf_4 | 371 | 395 | 1.6E-6 | IPR001876 |
| SMART | SM00547 | zf_4 | 404 | 428 | 0.036 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 402 | 431 | 9.303284 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 369 | 398 | 10.048569 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 406 | 425 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 373 | 392 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 551 | 876 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 340 | 355 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 687 | 720 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 90 | 139 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 730 | 746 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 820 | 876 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 340 | 363 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 90 | 104 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 586 | 606 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55040.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_042993233.1 | uncharacterized protein LOC122319303 [Carya illinoinensis] | 0 |
| Q8S9K3 | Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VAR3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5N6QV71 | Zinc finger protein VAR3, chloroplastic OS=Carpinus fangiana OX=176857 GN=FH972_006600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology