Basic Information
Locus ID:
Cgl06G1190
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 11895051 | 11905380 | - | Cgl06G1190 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.92 | 124,298.76 Da | 41.25 | 82.27 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 913 | 946 | 6.6E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 447 | 483 | 0.003 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 834 | 1098 | 1.03E-38 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 321 | 657 | 1.01E-38 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 752 | 968 | 3.2E-25 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 287 | 537 | 1.1E-26 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 560 | 672 | 6.4E-7 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 969 | 1109 | 1.0E-5 | IPR015943 |
| SMART | SM00320 | WD40_4 | 442 | 483 | 1.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1002 | 1038 | 94.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 864 | 904 | 3.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 334 | 375 | 3.0 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 1.2E-13 | IPR006595 |
| SMART | SM00320 | WD40_4 | 575 | 616 | 3.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 825 | 861 | 210.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 529 | 572 | 120.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 907 | 946 | 7.1E-7 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 1.0E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 1061 | 1093 | 90.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 485 | 526 | 0.016 | IPR001680 |
| SMART | SM00320 | WD40_4 | 392 | 436 | 120.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 449 | 485 | 8.804123 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 914 | 955 | 13.649761 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.385372 | IPR006595 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.093014 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 914 | 949 | 11.075592 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 470 | 484 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1094 | 1126 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 706 | 741 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1109 | 1126 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G27030.1 | TOPLESS-related 3. | 0 |
| RefSeq | XP_023929205.1 | topless-related protein 3-like isoform X2 [Quercus suber] | 0 |
| Q84JM4 | Topless-related protein 3 OS=Arabidopsis thaliana OX=3702 GN=TPR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6QU16 | Topless-related protein 3-like OS=Carpinus fangiana OX=176857 GN=FH972_006670 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology