Basic Information
Locus ID:
Cgl06G1174
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 11708834 | 11722791 | - | Cgl06G1174 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.78 | 168,864.38 Da | 48.45 | 75.94 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 220 | 400 | 4.66091E-82 | - |
| CDD | cd18794 | SF2_C_RecQ | 401 | 534 | 3.11559E-63 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 228 | 380 | 3.2E-12 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 418 | 524 | 4.9E-14 | IPR001650 |
| Pfam | PF14383 | DUF761-associated sequence motif | 688 | 716 | 5.7E-13 | IPR032795 |
| Pfam | PF14309 | Domain of unknown function (DUF4378) | 1359 | 1511 | 2.5E-29 | IPR025486 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 266 | 545 | 5.26E-46 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 286 | 400 | 6.7E-37 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 401 | 595 | 4.1E-50 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 183 | 285 | 5.1E-28 | IPR027417 |
| SMART | SM00487 | ultradead3 | 222 | 409 | 2.2E-20 | IPR014001 |
| SMART | SM00490 | helicmild6 | 443 | 525 | 4.5E-21 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 220 | 572 | 1.7E-122 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 418 | 565 | 18.361443 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 234 | 393 | 19.141684 | IPR014001 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 332 | 341 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1281 | 1302 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 673 | 688 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 890 | 1001 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 853 | 1001 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 670 | 694 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 853 | 889 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1241 | 1264 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05740.1 | RECQ helicase l1. | 0 |
| RefSeq | XP_023893678.1 | uncharacterized protein LOC112005616 isoform X3 [Quercus suber] | 0 |
| Q9FT74 | ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana OX=3702 GN=RECQL1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T2YQ66 | DNA helicase OS=Populus deltoides OX=3696 GN=H0E87_009651 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology