Basic Information
Locus ID:
Cgl06G0954
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
WD repeat domain phosphoinositide-interacting protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 9425746 | 9439443 | + | Cgl06G0954 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.93 | 144,822.13 Da | 45.39 | 76.66 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 1171 | 1202 | 0.0012 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 523 | 753 | 6.02E-22 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 953 | 1204 | 1.3E-35 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 594 | 823 | 6.8E-13 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 942 | 1282 | 8.1E-22 | IPR015943 |
| SMART | SM00320 | WD40_4 | 1118 | 1158 | 0.0015 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1036 | 1071 | 270.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1161 | 1202 | 5.7E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 945 | 984 | 170.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 687 | 727 | 0.018 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 429 | 446 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 53 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 322 | 358 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 51 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 426 | 446 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 911 | 950 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.1 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 0 |
| RefSeq | XP_018835470.1 | autophagy-related protein 18a-like isoform X2 [Juglans regia] | 0 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 0 | |
| TrEMBL | A0A0D3EYB7 | WD_REPEATS_REGION domain-containing protein OS=Oryza barthii OX=65489 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology