Basic Information
Locus ID:
Cgl06G0861
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 8436901 | 8447273 | + | Cgl06G0861 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.22 | 94,335.52 Da | 39.62 | 89.42 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17939 | DEADc_EIF4A | 479 | 677 | 2.04856E-134 | - |
| CDD | cd18787 | SF2_C_DEAD | 688 | 818 | 1.10104E-57 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 82 | 119 | 0.28 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 208 | 242 | 5.1E-4 | IPR001680 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 701 | 809 | 2.2E-28 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 500 | 661 | 3.2E-39 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 544 | 829 | 3.04E-73 | IPR027417 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 37 | 363 | 7.33E-33 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 8 | 359 | 1.8E-32 | IPR015943 |
| Gene3D | G3DSA:3.40.50.300 | - | 684 | 848 | 5.6E-57 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 465 | 683 | 4.9E-66 | IPR027417 |
| SMART | SM00320 | WD40_4 | 245 | 290 | 42.0 | IPR001680 |
| SMART | SM00490 | helicmild6 | 728 | 809 | 1.5E-31 | IPR001650 |
| SMART | SM00320 | WD40_4 | 25 | 57 | 430.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 79 | 120 | 0.0099 | IPR001680 |
| SMART | SM00487 | ultradead3 | 494 | 691 | 6.2E-56 | IPR014001 |
| SMART | SM00320 | WD40_4 | 203 | 242 | 5.7E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 149 | 187 | 28.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 210 | 247 | 10.653776 | - |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 475 | 503 | 10.40907 | IPR014014 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 506 | 676 | 28.924877 | IPR014001 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 210 | 251 | 14.05078 | IPR001680 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 687 | 848 | 25.86042 | IPR001650 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 229 | 243 | - | IPR019775 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 622 | 630 | - | IPR000629 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G54270.1 | eif4a-2. member of eIF4A - eukaryotic initiation factor 4A | 0 |
| RefSeq | XP_035546973.1 | eukaryotic initiation factor 4A-15-like [Juglans regia] | 0 |
| Q40468 | Eukaryotic initiation factor 4A-15 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6P9ESY1 | eukaryotic initiation factor 4A-15-like OS=Juglans regia OX=51240 GN=LOC109009115 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology