Basic Information
Locus ID:
Cgl06G0830
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
Belongs to the universal ribosomal protein uS3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 8145865 | 8149767 | + | Cgl06G0830 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.87 | 42,057.31 Da | 33.06 | 92.22 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02413 | 40S_S3_KH | 15 | 106 | 1.55766E-48 | - |
| Pfam | PF07650 | KH domain | 20 | 104 | 1.2E-6 | IPR004044 |
| Pfam | PF00189 | Ribosomal protein S3, C-terminal domain | 254 | 325 | 1.2E-21 | IPR001351 |
| SUPERFAMILY | SSF54821 | Ribosomal protein S3 C-terminal domain | 252 | 328 | 3.14E-21 | IPR036419 |
| SUPERFAMILY | SSF54814 | Prokaryotic type KH domain (KH-domain type II) | 10 | 110 | 2.18E-20 | IPR009019 |
| Gene3D | G3DSA:3.30.300.20 | - | 1 | 103 | 5.8E-44 | IPR015946 |
| Gene3D | G3DSA:3.30.1140.32 | - | 235 | 356 | 4.5E-53 | IPR036419 |
| ProSitePatterns | PS00548 | Ribosomal protein S3 signature. | 284 | 320 | - | IPR018280 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G35530.1 | Ribosomal protein S3 family protein. | 0 |
| RefSeq | XP_041006745.1 | 40S ribosomal protein S3-2-like [Juglans microcarpa x Juglans regia] | 0 |
| Q9FJA6 | Small ribosomal subunit protein uS3x OS=Arabidopsis thaliana OX=3702 GN=RPS3C PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N5MD13 | KH type-2 domain-containing protein OS=Salix brachista OX=2182728 GN=DKX38_010391 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology