Basic Information
Locus ID:
Cgl06G0793
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 7738196 | 7744773 | + | Cgl06G0793 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.65 | 78,474.46 Da | 46.49 | 82.59 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 26 | 218 | 4.95697E-93 | - |
| Pfam | PF16124 | RecQ zinc-binding | 347 | 418 | 3.8E-10 | IPR032284 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 237 | 332 | 1.7E-7 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 41 | 197 | 8.2E-12 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 75 | 355 | 5.34E-40 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 11 | 218 | 4.3E-76 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 219 | 436 | 3.2E-50 | IPR027417 |
| SMART | SM00487 | ultradead3 | 33 | 227 | 1.5E-23 | IPR014001 |
| SMART | SM00490 | helicmild6 | 262 | 334 | 6.8E-10 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 27 | 422 | 2.4E-119 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 45 | 211 | 20.040781 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 238 | 378 | 11.051684 | IPR001650 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 458 | 483 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 680 | 700 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 672 | 700 | - | - |
| Coils | Coil | Coil | 541 | 561 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35740.1 | DEAD/DEAH box RNA helicase family protein . Encodes RECQ3, an ATP-dependent helicase. | 0 |
| RefSeq | XP_050260313.1 | ATP-dependent DNA helicase Q-like 3 [Quercus robur] | 0 |
| Q9FT72 | ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana OX=3702 GN=RECQL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2I4FXC3 | ATP-dependent DNA helicase OS=Juglans regia OX=51240 GN=LOC109002834 PE=3 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology