Basic Information
Locus ID:
Cgl06G0704
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 6939898 | 6944133 | - | Cgl06G0704 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.26 | 32,096.54 Da | 49.59 | 82.55 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 50 | 102 | 6.43552E-20 | - |
| Pfam | PF12906 | RING-variant domain | 50 | 101 | 6.9E-12 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 47 | 106 | 3.65E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 33 | 113 | 1.6E-18 | IPR013083 |
| SMART | SM00744 | ringv_2 | 49 | 102 | 3.8E-19 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 42 | 108 | 21.646908 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 33 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 40 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11020.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_041005211.1 | uncharacterized protein LOC121250235 [Juglans microcarpa x Juglans regia] | 0 |
| TrEMBL | A0A6A1V979 | E3 ubiquitin-protein ligase MARCH1 OS=Morella rubra OX=262757 GN=CJ030_MR6G010468 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology