HalophFGD

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Basic Information
Locus ID: Cgl06G0567
Species & Taxonomic ID: Casuarina glauca & 3522
Genome Assembly: GCA_028551395.1
Description: Protein translocase subunit SecA
Maps and Mapping Data
Chromosome Start End Strand ID
chr06 5457441 5476192 + Cgl06G0567
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
6.06 160,055.09 Da 40.88 87.80 -0.37
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
CDD cd17928 DEXDc_SecA 553 866 1.76302E-95 -
CDD cd00862 ProRS_anticodon_zinc 304 493 3.4442E-77 -
CDD cd18803 SF2_C_secA 872 1133 1.02917E-71 IPR044722
CDD cd00778 ProRS_core_arch_euk 37 298 8.78461E-160 IPR033721
Pfam PF03129 Anticodon binding domain 315 411 1.4E-16 IPR004154
Pfam PF07517 SecA DEAD-like domain 525 664 1.1E-57 IPR011115
Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 130 296 6.9E-18 IPR002314
Pfam PF07517 SecA DEAD-like domain 666 854 9.7E-35 IPR011115
Pfam PF01043 SecA preprotein cross-linking domain 704 810 1.2E-35 IPR011130
Pfam PF07516 SecA Wing and Scaffold domain 1160 1375 2.0E-53 IPR011116
Pfam PF09180 Prolyl-tRNA synthetase, C-terminal 438 493 6.0E-14 IPR016061
SUPERFAMILY SSF81886 Helical scaffold and wing domains of SecA 1163 1386 5.62E-59 IPR036266
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 529 867 1.15E-55 IPR027417
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 868 1157 9.46E-51 IPR027417
SUPERFAMILY SSF81767 Pre-protein crosslinking domain of SecA 698 820 3.66E-43 IPR036670
SUPERFAMILY SSF55681 Class II aaRS and biotin synthetases 36 302 8.64E-76 -
SUPERFAMILY SSF64586 C-terminal domain of ProRS 434 488 8.63E-10 IPR017449
SUPERFAMILY SSF52954 Class II aaRS ABD-related 303 428 5.23E-31 -
Gene3D G3DSA:3.40.50.800 - 309 429 4.1E-37 IPR036621
Gene3D G3DSA:3.30.110.30 - 432 501 2.0E-16 IPR017449
Gene3D G3DSA:3.40.50.300 - 512 667 2.1E-64 IPR027417
Gene3D G3DSA:1.10.3060.10 Helical scaffold and wing domains of SecA 1164 1377 1.4E-54 -
Gene3D G3DSA:3.40.50.300 - 869 1162 2.5E-85 IPR027417
Gene3D G3DSA:3.30.930.10 Bira Bifunctional Protein; Domain 2 31 308 6.1E-111 -
Gene3D G3DSA:3.90.1440.10 - 700 820 3.9E-43 -
SMART SM00957 SecA_DEAD_2 518 854 7.5E-202 IPR011115
SMART SM00958 SecA_PP_bind_2 699 810 5.8E-58 IPR011130
SMART SM00946 ProRS_C_1_2 438 502 7.1E-10 IPR016061
TIGRFAM TIGR00408 proS_fam_I: proline--tRNA ligase 33 491 1.1E-171 IPR004499
TIGRFAM TIGR00963 secA: preprotein translocase, SecA subunit 665 1364 1.5E-267 IPR000185
ProSiteProfiles PS51196 SecA family profile. 514 1163 135.813934 IPR014018
ProSiteProfiles PS50862 Aminoacyl-transfer RNA synthetases class-II family profile. 70 308 19.515335 IPR006195
ProSitePatterns PS01312 SecA family signature. 954 969 - IPR020937
PRINTS PR00906 SecA protein signature 791 813 2.0E-27 IPR000185
PRINTS PR00906 SecA protein signature 828 845 2.0E-27 IPR000185
PRINTS PR00906 SecA protein signature 562 576 2.0E-27 IPR000185
PRINTS PR00906 SecA protein signature 865 878 2.0E-27 IPR000185
Hamap MF_01571 Proline--tRNA ligase [proS]. 31 519 36.935387 IPR004499
Hamap MF_01382 Protein translocase subunit SecA [secA]. 514 1378 17.691988 IPR000185
MobiDBLite mobidb-lite consensus disorder prediction 1 26 - -
MobiDBLite mobidb-lite consensus disorder prediction 1386 1419 - -
MobiDBLite mobidb-lite consensus disorder prediction 1402 1419 - -
Gene Ontology
Biological Process:
GO:0006418 (tRNA aminoacylation for protein translation) GO:0006433 (prolyl-tRNA aminoacylation) GO:0006605 (protein targeting) GO:0006886 (intracellular protein transport) GO:0017038 (protein import)
Molecular Function:
GO:0000166 (nucleotide binding) GO:0004812 (aminoacyl-tRNA ligase activity) GO:0004827 (proline-tRNA ligase activity) GO:0005524 (ATP binding)
Cellular Component:
GO:0005737 (cytoplasm) GO:0016020 (membrane)
KEGG Pathway
KO Term:
K03070 (preprotein translocase subunit SecA [EC:7.4.2.8])
Pathway:
ko02024 (Quorum sensing) map02024 (Quorum sensing) ko03060 (Protein export) map03060 (Protein export) ko03070 (Bacterial secretion system) map03070 (Bacterial secretion system)
Best hit
Source Best Hit ID Description E-value
TAIR AT4G01800.1 Albino or Glassy Yellow 1. Encodes the ATPase subunit of the chloroplast Sec translocation machinery which plays an essential role in chloroplast biogenesis and the regulation of photosynthesis, the absence of which triggers a retrograde signal, eventually leading to a reprogramming of chloroplast and mitochondrial gene expression. 0
RefSeq XP_042992250.1 protein translocase subunit SecA, chloroplastic [Carya illinoinensis] 0
Swiss-Prot Q9SYI0 Protein translocase subunit SECA1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SECA1 PE=1 SV=2 0
TrEMBL A0A2I4FMS0 Protein translocase subunit SecA OS=Juglans regia OX=51240 GN=LOC109000491 PE=3 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Acanthaceae Avicennia marina 2 jg10458, jg9019
Aizoaceae Mesembryanthemum crystallinum 2 gene_1077, gene_13408
Amaranthaceae Atriplex hortensis 2 Ah024121, Ah031607
Amaranthaceae Beta vulgaris 2 BVRB_1g010050, BVRB_5g122730
Amaranthaceae Salicornia bigelovii 5 Sbi_jg2775, Sbi_jg28369, Sbi_jg31191, Sbi_jg58082 ...
Sbi_jg58084
Amaranthaceae Salicornia europaea 2 Seu_jg25704, Seu_jg7111
Amaranthaceae Suaeda aralocaspica 2 GOSA_00004576, GOSA_00020180
Amaranthaceae Suaeda glauca 4 Sgl11665, Sgl17164, Sgl54639, Sgl59975
Amaranthaceae Chenopodium album 6 gene:ENSEOMG00000011856, gene:ENSEOMG00000013510 ...
gene:ENSEOMG00000031530, gene:ENSEOMG00000034341, gene:ENSEOMG00000044225, gene:ENSEOMG00000046942
Amaranthaceae Chenopodium quinoa 4 CQ.Regalona.r1.1AG0012840, CQ.Regalona.r1.1BG0013100 ...
CQ.Regalona.r1.8AG0010550, CQ.Regalona.r1.8BG0011700
Anacardiaceae Pistacia vera 2 pistato.v30007280, pistato.v30039110
Apiaceae Apium graveolens 3 Ag11G03939, Ag6G02443, Ag9G02368
Arecaceae Cocos nucifera 2 COCNU_01G000270, COCNU_15G003170
Arecaceae Phoenix dactylifera 2 gene-LOC103701417, gene-LOC103720122
Asparagaceae Asparagus officinalis 2 AsparagusV1_02.2259.V1.1, AsparagusV1_07.3638.V1.1
Asteraceae Flaveria trinervia 2 Ftri10G32559, Ftri18G11286
Brassicaceae Arabidopsis thaliana 2 AT1G21650.3, AT4G01800.2
Brassicaceae Eutrema salsugineum 2 Thhalv10006535m.g.v1.0, Thhalv10028392m.g.v1.0
Brassicaceae Schrenkiella parvula 2 Sp1g19170.v2.2, Sp6g01650.v2.2
Brassicaceae Brassica nigra 2 BniB03g009290.2N, BniB08g040660.2N
Casuarinaceae Casuarina equisetifolia 2 Ceq03G1867, Ceq06G0547
Casuarinaceae Casuarina glauca 2 Cgl03G2007, Cgl06G0567
Cymodoceaceae Cymodocea nodosa 2 gene.Cymno05g06910, gene.Cymno08g07140
Dunaliellaceae Dunaliella salina 2 Dusal.0027s00037.v1.0, Dusal.0035s00032.v1.0
Hydrocharitaceae Thalassia testudinum 2 gene.Thate01g16040, gene.Thate05g12950
Nitrariaceae Nitraria sibirica 2 evm.TU.LG04.547, evm.TU.LG06.839
Plantaginaceae Plantago ovata 2 Pov_00016539, Pov_00021694
Plumbaginaceae Limonium bicolor 2 Lb4G22942, Lb6G30841
Poaceae Echinochloa crus-galli 5 AH02.1497, BH02.1573, BH04.644, CH02.1719, CH04.655
Poaceae Eleusine coracana subsp. coracana 4 gene-QOZ80_1AG0015110, gene-QOZ80_1BG0063980 ...
gene-QOZ80_9AG0670100, gene-QOZ80_9BG0693570
Poaceae Hordeum vulgare 2 HORVU.MOREX.r3.3HG0259100.1, HORVU.MOREX.r3.4HG0347020.1
Poaceae Lolium multiflorum 3 gene-QYE76_052738, gene-QYE76_059523, gene-QYE76_064524
Poaceae Oryza coarctata 3 Oco01G009280, Oco02G009570, Oco22G003520
Poaceae Oryza sativa 2 LOC_Os01g21820.1, LOC_Os11g08980.1
Poaceae Paspalum vaginatum 2 gene-BS78_03G139800, gene-BS78_05G097000
Poaceae Puccinellia tenuiflora 2 Pt_Chr0103927, Pt_Chr0603665
Poaceae Sporobolus alterniflorus 6 Chr02G022280, Chr05G013160, Chr05G013200, Chr05G013210 ...
Chr16G010730, Chr17G009810
Poaceae Thinopyrum elongatum 2 Tel3E01G338700, Tel4E01G158600
Poaceae Triticum dicoccoides 4 gene_TRIDC3AG028190, gene_TRIDC3BG032070 ...
gene_TRIDC4AG034290, gene_TRIDC4BG015530
Poaceae Triticum aestivum 6 TraesCS3A02G198400.1, TraesCS3B02G222700.1 ...
TraesCS3D02G196700.2, TraesCS4A02G216200.1, TraesCS4B02G100000.1, TraesCS4D02G096200.1
Poaceae Zea mays 2 Zm00001eb090990_P001, Zm00001eb130760_P002
Poaceae Zoysia japonica 2 nbis-gene-27238, nbis-gene-6517
Poaceae Zoysia macrostachya 2 Zma_g10242, Zma_g18533
Portulacaceae Portulaca oleracea 3 evm.TU.LG04.1549, evm.TU.LG10.1366, evm.TU.LG11.1721
Posidoniaceae Posidonia oceanica 2 gene.Posoc01g13940, gene.Posoc05g18660
Rhizophoraceae Bruguiera sexangula 2 evm.TU.Scaffold_5_RagTag.729, evm.TU.Scaffold_7_RagTag.1138
Rhizophoraceae Carallia pectinifolia 2 nbisL1-mrna-10616, nbisL1-mrna-18708
Rhizophoraceae Ceriops tagal 2 nbisL1-mrna-103, nbisL1-mrna-5559
Rhizophoraceae Ceriops zippeliana 2 nbisL1-mrna-11369, nbisL1-mrna-13125
Rhizophoraceae Kandelia candel 2 evm.TU.utg000002l.412, evm.TU.utg000006l.609
Rhizophoraceae Kandelia obovata 2 Maker00011737, Maker00013085
Rhizophoraceae Rhizophora apiculata 2 nbisL1-mrna-10163, nbisL1-mrna-8110
Rhizophoraceae Rhizophora mangle 2 nbisL1-mrna-7364, nbisL1-mrna-9803
Salicaceae Populus euphratica 2 populus_peu27429, populus_peu32459
Solanaceae Lycium barbarum 2 gene-LOC132627149, gene-LOC132644885
Solanaceae Solanum chilense 2 SOLCI001197400, SOLCI003112400
Solanaceae Solanum pennellii 2 gene-LOC107002391, gene-LOC107004481
Tamaricaceae Reaumuria soongarica 2 gene_17557, gene_866
Tamaricaceae Tamarix chinensis 2 TC03G2545, TC07G1717
Zosteraceae Zostera marina 4 Zosma03g36860.v3.1, Zosma03g36910.v3.1, Zosma06g28380.v3.1 ...
Zosma07g00120.v3.1
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