halophFGD

Basic Information

Locus ID: Cgl06G0406

Species & Taxonomic ID: Casuarina glauca & 3522

Genome Assembly: GCA_028551395.1

Description: E3 ubiquitin-protein ligase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr06	3904055	3905654	+	Cgl06G0406

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.48	12,653.52 Da	75.47	44.15	-1.77

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
MobiDBLite	mobidb-lite	consensus disorder prediction	1	106	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	82	106	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	30	59	-	-

KEGG Pathway

KO Term:

K11982 (E3 ubiquitin-protein ligase RNF115/126 [EC:2.3.2.27])

Best hit

Source	Best Hit ID	Description
TAIR	AT4G26400.1	RING/U-box superfamily protein.
RefSeq	XP_018846372.1	E3 ubiquitin-protein ligase SIRP1 isoform X2 [Juglans regia]
TrEMBL	A0A660KMI9	RING-type domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_009533 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg38166
Anacardiaceae	Pistacia vera	2	pistato.v30085460, pistato.v30089740
Apiaceae	Apium graveolens	1	AgUnG01409
Arecaceae	Cocos nucifera	4	COCNU_04G005370, COCNU_04G011700, COCNU_16G005370 ... contig68946922G000010
Arecaceae	Phoenix dactylifera	4	gene-LOC103701051, gene-LOC103705352, gene-LOC103709650 ... gene-LOC103719748
Asparagaceae	Asparagus officinalis	4	AsparagusV1_02.1517.V1.1, AsparagusV1_04.470.V1.1 ... AsparagusV1_05.2301.V1.1, AsparagusV1_07.837.V1.1
Asteraceae	Flaveria trinervia	3	Ftri12G11428, Ftri16G01532, Ftri2G00136
Brassicaceae	Arabidopsis thaliana	4	AT1G55530.1, AT3G13430.1, AT4G26400.2, AT5G56340.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10012351m.g.v1.0, Thhalv10013831m.g.v1.0 ... Thhalv10021230m.g.v1.0, Thhalv10025560m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp1g41140.v2.2, Sp3g11620.v2.2, Sp6g18170.v2.2 ... Sp7g24300.v2.2
Brassicaceae	Brassica nigra	7	BniB02g035240.2N, BniB02g082410.2N, BniB05g011040.2N ... BniB05p000282.2N, BniB06g025930.2N, BniB07g000950.2N, BniB08g014620.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq05G2480
Casuarinaceae	Casuarina glauca	2	Cgl05G2693, Cgl06G0406
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno02g17700
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate06g05750, gene.Thate07g12040
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG03.2089, evm.TU.LG09.340
Plantaginaceae	Plantago ovata	2	Pov_00025594, Pov_00041582
Poaceae	Echinochloa crus-galli	9	AH01.3791, AH05.1983, AH08.559, BH01.4134, BH05.2108 ... CH01.237, CH01.4404, CH03.685, CH05.2179
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_3AG0210960, gene-QOZ80_3AG0246670 ... gene-QOZ80_3BG0256180, gene-QOZ80_3BG0281540, gene-QOZ80_5AG0368920, gene-QOZ80_5BG0416490
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.1HG0070130.1.CDS1 ... HORVU.MOREX.r3.4HG0379920.1.CDS1, HORVU.MOREX.r3.5HG0524500.1.CDS1
Poaceae	Lolium multiflorum	4	gene-QYE76_007808, gene-QYE76_013946, gene-QYE76_068236 ... gene-QYE76_068255
Poaceae	Oryza coarctata	4	Oco05G012390, Oco06G014060, Oco09G012670, Oco10G012740
Poaceae	Oryza sativa	3	LOC_Os03g20870.1, LOC_Os03g59760.1, LOC_Os05g40980.1
Poaceae	Paspalum vaginatum	2	gene-BS78_01G036300, gene-BS78_01G368300
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0504454, Pt_Chr0504513
Poaceae	Sporobolus alterniflorus	10	Chr01G001880, Chr01G018180, Chr01G033650, Chr04G010270 ... Chr04G031260, Chr07G030260, Chr12G005950, Chr12G033590, Chr18G012530, Chr22G005240
Poaceae	Thinopyrum elongatum	3	Tel1E01G494100, Tel4E01G316200, Tel5E01G740400
Poaceae	Triticum dicoccoides	6	gene_TRIDC1AG045460, gene_TRIDC1BG051430 ... gene_TRIDC4AG017980, gene_TRIDC4BG033960, gene_TRIDC5AG066910, gene_TRIDC5BG072050
Poaceae	Triticum aestivum	8	TraesCS1B02G316300.1.cds1, TraesCS1D02G305300.1.cds1 ... TraesCS4A02G129800.1.cds1, TraesCS4B02G174800.1.cds1, TraesCS4D02G176700.1.cds1, TraesCS5A02G467700.1.cds1, TraesCS5B02G480100.1.cds1, TraesCS5D02G480800.1.cds1
Poaceae	Zea mays	4	Zm00001eb212150_P001, Zm00001eb291150_P001 ... Zm00001eb352220_P001, Zm00001eb395440_P001
Poaceae	Zoysia japonica	4	nbis-gene-15457, nbis-gene-16568, nbis-gene-25336 ... nbis-gene-3431
Poaceae	Zoysia macrostachya	5	Zma_g1300, Zma_g199, Zma_g2507, Zma_g28469, Zma_g3717
Portulacaceae	Portulaca oleracea	2	evm.TU.LG18.1093, evm.TU.LG20.779
Posidoniaceae	Posidonia oceanica	2	gene.Posoc02g05990, gene.Posoc02g12830
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_1_RagTag.399, evm.TU.Scaffold_7_RagTag.1769 ... evm.TU.Scaffold_8_RagTag.11
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-10346, nbisL1-mrna-19763
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-16094, nbisL1-mrna-4416
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-17658, nbisL1-mrna-5432
Rhizophoraceae	Kandelia candel	3	add.evm.TU.utg000002l.2, add.evm.TU.utg000012l.92 ... add.evm.TU.utg000018l.393
Rhizophoraceae	Kandelia obovata	2	Maker00003503, Maker00012119
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-17872, nbisL1-mrna-19058, nbisL1-mrna-20135
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-12450, nbisL1-mrna-20449, nbisL1-mrna-548
Salicaceae	Populus euphratica	5	populus_peu04497, populus_peu16097, populus_peu19406 ... populus_peu19420, populus_peu35307
Solanaceae	Lycium barbarum	1	gene-LOC132626503
Solanaceae	Solanum chilense	1	SOLCI000816700
Solanaceae	Solanum pennellii	1	gene-LOC107008529
Tamaricaceae	Reaumuria soongarica	1	gene_5466
Zosteraceae	Zostera marina	1	Zosma06g25510.v3.1