Basic Information
Locus ID:
Cgl06G0375
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
Rhamnogalacturonate lyase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 3527157 | 3538666 | - | Cgl06G0375 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.73 | 146,410.63 Da | 36.67 | 78.17 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10316 | RGL4_M | 993 | 1092 | 9.26626E-31 | IPR029413 |
| CDD | cd10317 | RGL4_C | 479 | 620 | 3.12524E-36 | - |
| CDD | cd10317 | RGL4_C | 1104 | 1290 | 6.09558E-44 | - |
| CDD | cd10316 | RGL4_M | 368 | 459 | 1.97732E-31 | IPR029413 |
| CDD | cd10320 | RGL4_N | 673 | 959 | 3.90323E-65 | - |
| CDD | cd10320 | RGL4_N | 64 | 335 | 1.8292E-69 | - |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 670 | 863 | 4.6E-70 | IPR010325 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 68 | 237 | 7.7E-69 | IPR010325 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 477 | 620 | 1.1E-31 | IPR029411 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 1102 | 1289 | 2.4E-46 | IPR029411 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 391 | 461 | 1.1E-23 | IPR029413 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 1018 | 1087 | 4.7E-21 | IPR029413 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 1100 | 1290 | 5.95E-44 | IPR008979 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 475 | 620 | 4.93E-30 | IPR008979 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 674 | 959 | 2.79E-8 | IPR011013 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 990 | 1091 | 6.47E-10 | IPR013784 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 64 | 334 | 4.08E-6 | IPR011013 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 364 | 467 | 1.96E-7 | IPR013784 |
| Gene3D | G3DSA:2.70.98.10 | - | 63 | 341 | 1.7E-15 | IPR014718 |
| Gene3D | G3DSA:2.70.98.10 | - | 672 | 963 | 5.1E-16 | IPR014718 |
| Gene3D | G3DSA:2.60.40.1120 | - | 990 | 1090 | 6.4E-11 | - |
| Gene3D | G3DSA:2.60.120.260 | - | 475 | 618 | 1.4E-8 | - |
| Gene3D | G3DSA:2.60.120.260 | - | 1100 | 1290 | 5.6E-15 | - |
| Gene3D | G3DSA:2.60.40.1120 | - | 365 | 466 | 2.4E-6 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G22620.1 | Rhamnogalacturonate lyase family protein. | 0 |
| RefSeq | XP_011016984.1 | PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105120478 [Populus euphratica] | 0 |
| B0XPA2 | Probable rhamnogalacturonate lyase B OS=Aspergillus fumigatus (strain CBS 144.89 / FGSC A1163 / CEA10) OX=451804 GN=rglB PE=3 SV=1 | 0 | |
| TrEMBL | A0A200QXQ6 | rhamnogalacturonan endolyase OS=Macleaya cordata OX=56857 GN=BVC80_5g36 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology