Basic Information
Locus ID:
Cgl06G0374
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
Rhamnogalacturonate lyase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 3515841 | 3521763 | - | Cgl06G0374 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.07 | 72,891.70 Da | 34.72 | 77.73 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10316 | RGL4_M | 381 | 437 | 7.73837E-14 | IPR029413 |
| CDD | cd10317 | RGL4_C | 456 | 642 | 5.6457E-50 | - |
| CDD | cd10320 | RGL4_N | 68 | 346 | 6.11419E-72 | - |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 454 | 641 | 1.0E-48 | IPR029411 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 406 | 437 | 6.4E-6 | IPR029413 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 56 | 251 | 1.2E-72 | IPR010325 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 452 | 642 | 5.44E-45 | IPR008979 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 62 | 348 | 1.76E-7 | IPR011013 |
| Gene3D | G3DSA:2.70.98.10 | - | 60 | 355 | 5.6E-14 | IPR014718 |
| Gene3D | G3DSA:2.60.120.260 | - | 452 | 642 | 4.8E-16 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G22620.1 | Rhamnogalacturonate lyase family protein. | 0 |
| RefSeq | XP_041016447.1 | rhamnogalacturonate lyase-like [Juglans microcarpa x Juglans regia] | 0 |
| TrEMBL | A0A6P9FA12 | rhamnogalacturonan endolyase OS=Juglans regia OX=51240 GN=LOC108984581 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology