Basic Information
Locus ID:
Cgl06G0178
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
PA domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 1586724 | 1593517 | - | Cgl06G0178 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.50 | 51,762.91 Da | 38.32 | 89.46 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00158 | RHOD | 335 | 433 | 6.74927E-18 | - |
| CDD | cd02123 | PA_C_RZF_like | 31 | 152 | 7.20762E-37 | IPR044744 |
| CDD | cd16454 | RING-H2_PA-TM-RING | 227 | 276 | 2.13884E-18 | - |
| Pfam | PF13639 | Ring finger domain | 227 | 276 | 9.3E-11 | IPR001841 |
| Pfam | PF00581 | Rhodanese-like domain | 336 | 434 | 1.5E-9 | IPR001763 |
| Pfam | PF02225 | PA domain | 75 | 139 | 2.7E-8 | IPR003137 |
| SUPERFAMILY | SSF52821 | Rhodanese/Cell cycle control phosphatase | 325 | 436 | 4.85E-22 | IPR036873 |
| SUPERFAMILY | SSF52025 | PA domain | 77 | 148 | 3.79E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 221 | 282 | 1.13E-16 | - |
| Gene3D | G3DSA:3.40.250.10 | - | 314 | 438 | 2.8E-29 | IPR036873 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 201 | 285 | 1.1E-17 | IPR013083 |
| Gene3D | G3DSA:3.50.30.30 | - | 21 | 150 | 1.4E-23 | - |
| SMART | SM00184 | ring_2 | 228 | 275 | 0.0025 | IPR001841 |
| SMART | SM00450 | rhod_4 | 330 | 438 | 5.5E-16 | IPR001763 |
| ProSiteProfiles | PS50206 | Rhodanese domain profile. | 339 | 441 | 16.738552 | IPR001763 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 228 | 276 | 12.046688 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66160.2 | receptor homology region transmembrane domain ring H2 motif protein 1. Encodes a receptor homology region transmembrane domain, ring H2 motif protein involved in transport of storage proteins to protein storage vacuoles. Co-localizes with DIP positive vesicles. | 0 |
| RefSeq | XP_023911985.1 | receptor homology region, transmembrane domain- and RING domain-containing protein 1-like [Quercus suber] | 0 |
| Q9M622 | Receptor homology region, transmembrane domain- and RING domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=RMR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A4U5PT44 | Receptor-likey region, transmembrane domain-and RING domain-containing protein 1 OS=Populus alba OX=43335 GN=D5086_0000184970 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology