Basic Information
Locus ID:
Cgl06G0138
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
Found in Skp1 protein family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 1234968 | 1244208 | - | Cgl06G0138 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.05 | 65,193.66 Da | 41.60 | 91.89 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18322 | BTB_POZ_SKP1 | 260 | 369 | 1.5371E-39 | - |
| CDD | cd18322 | BTB_POZ_SKP1 | 6 | 120 | 1.53142E-42 | - |
| CDD | cd18322 | BTB_POZ_SKP1 | 391 | 505 | 5.29991E-56 | - |
| Pfam | PF01466 | Skp1 family, dimerisation domain | 106 | 130 | 5.5E-5 | IPR016072 |
| Pfam | PF01466 | Skp1 family, dimerisation domain | 214 | 252 | 1.1E-19 | IPR016072 |
| Pfam | PF03931 | Skp1 family, tetramerisation domain | 390 | 449 | 3.7E-30 | IPR016073 |
| Pfam | PF03931 | Skp1 family, tetramerisation domain | 5 | 64 | 1.9E-25 | IPR016073 |
| Pfam | PF03931 | Skp1 family, tetramerisation domain | 259 | 318 | 2.6E-23 | IPR016073 |
| Pfam | PF03931 | Skp1 family, tetramerisation domain | 128 | 171 | 4.0E-5 | IPR016073 |
| Pfam | PF01466 | Skp1 family, dimerisation domain | 491 | 536 | 4.3E-26 | IPR016072 |
| SUPERFAMILY | SSF81382 | Skp1 dimerisation domain-like | 463 | 536 | 5.36E-30 | IPR036296 |
| SUPERFAMILY | SSF54695 | POZ domain | 390 | 450 | 7.59E-21 | IPR011333 |
| SUPERFAMILY | SSF81382 | Skp1 dimerisation domain-like | 324 | 373 | 1.57E-11 | IPR036296 |
| SUPERFAMILY | SSF81382 | Skp1 dimerisation domain-like | 75 | 130 | 3.01E-16 | IPR036296 |
| SUPERFAMILY | SSF54695 | POZ domain | 260 | 319 | 5.49E-19 | IPR011333 |
| SUPERFAMILY | SSF54695 | POZ domain | 5 | 65 | 1.92E-19 | IPR011333 |
| SUPERFAMILY | SSF81382 | Skp1 dimerisation domain-like | 186 | 253 | 9.16E-25 | IPR036296 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 258 | 380 | 1.1E-41 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 384 | 540 | 2.2E-71 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 130 | 257 | 4.4E-43 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 2 | 129 | 5.1E-48 | IPR011333 |
| SMART | SM00512 | skp1_3 | 258 | 354 | 1.8E-40 | IPR001232 |
| SMART | SM00512 | skp1_3 | 117 | 212 | 1.3E-13 | IPR001232 |
| SMART | SM00512 | skp1_3 | 4 | 105 | 2.0E-41 | IPR001232 |
| SMART | SM00512 | skp1_3 | 389 | 490 | 1.3E-54 | IPR001232 |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
ko04110 (Cell cycle)
map04110 (Cell cycle)
ko04111 (Cell cycle - yeast)
map04111 (Cell cycle - yeast)
ko04114 (Oocyte meiosis)
map04114 (Oocyte meiosis)
ko04120 (Ubiquitin mediated proteolysis)
map04120 (Ubiquitin mediated proteolysis)
ko04141 (Protein processing in endoplasmic reticulum)
map04141 (Protein processing in endoplasmic reticulum)
ko04310 (Wnt signaling pathway)
map04310 (Wnt signaling pathway)
ko04341 (Hedgehog signaling pathway - fly)
map04341 (Hedgehog signaling pathway - fly)
ko04350 (TGF-beta signaling pathway)
map04350 (TGF-beta signaling pathway)
ko04710 (Circadian rhythm)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42190.1 | E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein. Similar to SKP1 in yeast and humans which are involved in mitotic cell cycle control and ubiquitin mediated proteolysis. | 0 |
| RefSeq | XP_034681193.1 | uncharacterized protein LOC117911105 isoform X2 [Vitis riparia] | 0 |
| Q9FHW7 | SKP1-like protein 1B OS=Arabidopsis thaliana OX=3702 GN=SKP1B PE=1 SV=1 | 0 | |
| TrEMBL | F6I100 | SKP1-like protein OS=Vitis vinifera OX=29760 GN=VIT_03s0038g02480 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for Cgl06G0138.