Basic Information
Locus ID:
Cgl05G2264
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr05 | 25768782 | 25772046 | + | Cgl05G2264 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.50 | 31,590.19 Da | 53.37 | 77.64 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16571 | RING-HC_SIAHs | 3 | 40 | 7.10488E-13 | - |
| Pfam | PF03145 | Seven in absentia protein family | 47 | 245 | 3.3E-79 | IPR018121 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 58 | 246 | 1.11E-46 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 53 | 108 | 7.1E-18 | IPR013083 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 109 | 246 | 1.4E-34 | IPR008974 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 5 | 41 | 8.874793 | IPR001841 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 58 | 118 | 14.245239 | IPR013010 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G58040.1 | seven in absentia of Arabidopsis 2. Encodes a RING finger domain containing protein that interacts with AtRAP2.2. | 0 |
| RefSeq | XP_021891124.1 | E3 ubiquitin-protein ligase SINAT2-like [Carica papaya] | 0 |
| Q9M2P4 | E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis thaliana OX=3702 GN=SINAT2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A660KMH4 | RING-type E3 ubiquitin transferase OS=Carpinus fangiana OX=176857 GN=FH972_009631 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology