Basic Information
Locus ID:
Cgl05G2263
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr05 | 25762001 | 25766609 | + | Cgl05G2263 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.21 | 42,899.48 Da | 43.16 | 72.03 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03829 | Sina | 241 | 369 | 1.21744E-60 | - |
| CDD | cd16571 | RING-HC_SIAHs | 125 | 163 | 6.43406E-16 | - |
| Pfam | PF03145 | Seven in absentia protein family | 169 | 367 | 9.3E-82 | IPR018121 |
| SUPERFAMILY | SSF57850 | RING/U-box | 114 | 167 | 1.85E-7 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 180 | 371 | 5.49E-48 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 90 | 179 | 1.6E-9 | IPR013083 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 232 | 368 | 3.5E-37 | IPR008974 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 180 | 231 | 9.0E-17 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 127 | 163 | 9.553431 | IPR001841 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 180 | 240 | 14.057522 | IPR013010 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 97 | 117 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G58040.1 | seven in absentia of Arabidopsis 2. Encodes a RING finger domain containing protein that interacts with AtRAP2.2. | 0 |
| RefSeq | XP_030955705.1 | E3 ubiquitin-protein ligase SINAT2-like [Quercus lobata] | 0 |
| Q9M2P4 | E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis thaliana OX=3702 GN=SINAT2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A660KMH4 | RING-type E3 ubiquitin transferase OS=Carpinus fangiana OX=176857 GN=FH972_009631 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology