Basic Information
Locus ID:
Cgl05G2209
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr05 | 24985099 | 24989052 | - | Cgl05G2209 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.91 | 37,347.08 Da | 44.84 | 73.77 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 191 | 336 | 1.59E-14 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 186 | 337 | 3.7E-15 | IPR015943 |
| SMART | SM00356 | c3hfinal6 | 24 | 48 | 0.0046 | IPR000571 |
| SMART | SM00320 | WD40_4 | 298 | 336 | 12.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 190 | 229 | 2.7E-5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 197 | 238 | 12.613797 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 197 | 229 | 10.07378 | - |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 23 | 49 | 12.624209 | IPR000571 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_023920232.1 | zinc finger CCCH domain-containing protein 63-like [Quercus suber] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5N6REV3 | WD_REPEATS_REGION domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_015225 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology