Basic Information
Locus ID:
Cgl05G2190
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
Zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr05 | 24592508 | 24597603 | - | Cgl05G2190 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.58 | 71,154.79 Da | 40.09 | 85.45 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 351 | 388 | 0.0018 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 356 | 624 | 2.17E-30 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 328 | 406 | 5.6E-7 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 407 | 639 | 3.0E-18 | IPR015943 |
| SMART | SM00320 | WD40_4 | 584 | 629 | 250.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 423 | 460 | 49.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 503 | 540 | 7.8E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 343 | 388 | 9.5E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 468 | 500 | 150.0 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 166 | 190 | 0.0036 | IPR000571 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 356 | 397 | 9.439068 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 510 | 549 | 9.138305 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 165 | 191 | 12.877715 | IPR000571 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 280 | 321 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_030967528.1 | zinc finger CCCH domain-containing protein 17-like isoform X2 [Quercus lobata] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A7N2R3N8 | Zinc finger CCCH domain-containing protein 48-like OS=Quercus lobata OX=97700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology