Basic Information
Locus ID:
Cgl05G1749
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Short Name:
UBP16
Description:
ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr05 | 19176952 | 19179000 | - | Cgl05G1749 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.88 | 75,247.42 Da | 49.89 | 75.91 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 74 | 111 | 2.3E-7 | IPR002893 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 247 | 551 | 5.5E-45 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 244 | 557 | 6.87E-84 | IPR038765 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 68 | 113 | 9.07E-11 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 240 | 563 | 1.7E-92 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 64 | 116 | 4.6E-11 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 247 | 554 | 50.860928 | IPR028889 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 74 | 111 | 11.455751 | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 248 | 263 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 109 | 145 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 622 | 647 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 573 | 600 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24560.1 | ubiquitin-specific protease 16. Encodes a ubiquitin-specific protease. There is no evidence for a phenotype in ubp16-1 mutants, however, double mutant analysis with ubp15 mutants reveals a role for UBP16 in plant development and cell proliferation. | 0 |
| RefSeq | XP_041016639.1 | LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal hydrolase 17-like [Juglans microcarpa x Juglans regia] | 0 |
| Q9SB51 | Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana OX=3702 GN=UBP16 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6R7H5 | Ubiquitin carboxyl-terminal hydrolase 16 OS=Carpinus fangiana OX=176857 GN=FH972_013689 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology