Basic Information
Locus ID:
Cgl05G1745
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Short Name:
UBP16
Description:
ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr05 | 19142139 | 19146712 | - | Cgl05G1745 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.50 | 86,629.86 Da | 49.19 | 75.12 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 347 | 652 | 9.5E-45 | IPR001394 |
| Pfam | PF01753 | MYND finger | 165 | 202 | 8.7E-8 | IPR002893 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 159 | 205 | 3.31E-11 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 344 | 658 | 3.92E-83 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 340 | 664 | 8.1E-92 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 154 | 207 | 1.4E-11 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 165 | 202 | 11.568099 | IPR002893 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 347 | 655 | 50.431767 | IPR028889 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 721 | 749 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 673 | 701 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24560.1 | ubiquitin-specific protease 16. Encodes a ubiquitin-specific protease. There is no evidence for a phenotype in ubp16-1 mutants, however, double mutant analysis with ubp15 mutants reveals a role for UBP16 in plant development and cell proliferation. | 0 |
| RefSeq | XP_041016639.1 | LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal hydrolase 17-like [Juglans microcarpa x Juglans regia] | 0 |
| Q9SB51 | Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana OX=3702 GN=UBP16 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6R7H5 | Ubiquitin carboxyl-terminal hydrolase 16 OS=Carpinus fangiana OX=176857 GN=FH972_013689 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology