Basic Information
Locus ID:
Cgl05G1743
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Short Name:
UBP16
Description:
ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr05 | 19123442 | 19125517 | - | Cgl05G1743 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.89 | 76,332.29 Da | 49.55 | 75.64 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 256 | 560 | 2.9E-46 | IPR001394 |
| Pfam | PF01753 | MYND finger | 74 | 111 | 9.3E-8 | IPR002893 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 255 | 562 | 2.16E-84 | IPR038765 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 68 | 114 | 7.5E-11 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 64 | 116 | 5.7E-11 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 249 | 572 | 2.1E-93 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 74 | 111 | 11.473036 | IPR002893 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 256 | 563 | 51.447449 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 257 | 272 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 113 | 133 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 629 | 658 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 581 | 610 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 113 | 138 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24560.1 | ubiquitin-specific protease 16. Encodes a ubiquitin-specific protease. There is no evidence for a phenotype in ubp16-1 mutants, however, double mutant analysis with ubp15 mutants reveals a role for UBP16 in plant development and cell proliferation. | 0 |
| RefSeq | XP_035538732.1 | ubiquitin carboxyl-terminal hydrolase 17-like [Juglans regia] | 0 |
| Q9SB51 | Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana OX=3702 GN=UBP16 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6R7H5 | Ubiquitin carboxyl-terminal hydrolase 16 OS=Carpinus fangiana OX=176857 GN=FH972_013689 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology