Basic Information
Locus ID:
Cgl05G1691
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
Vacuolar protein sorting-associated protein 41 homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr05 | 18299188 | 18309328 | + | Cgl05G1691 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.94 | 108,425.07 Da | 47.15 | 88.31 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16484 | RING-H2_Vps | 878 | 909 | 1.45578E-9 | - |
| Pfam | PF00637 | Region in Clathrin and VPS | 618 | 760 | 8.6E-21 | IPR000547 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 63 | 254 | 2.56E-16 | IPR036322 |
| SUPERFAMILY | SSF57850 | RING/U-box | 872 | 909 | 8.21E-5 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 9 | 292 | 1.4E-16 | IPR015943 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 659 | 822 | 2.4E-13 | IPR011990 |
| SMART | SM00320 | WD40_4 | 179 | 215 | 260.0 | IPR001680 |
| SMART | SM00299 | CLH_2 | 617 | 764 | 3.2E-34 | IPR000547 |
| SMART | SM00320 | WD40_4 | 91 | 130 | 8.3E-5 | IPR001680 |
| PIRSF | PIRSF028921 | Vps41 | 3 | 920 | 0.0 | IPR016902 |
| ProSiteProfiles | PS50236 | Clathrin heavy-chain (CHCR) repeat profile. | 617 | 764 | 39.842064 | IPR000547 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 11 | 44 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 50 | - | - |
| Coils | Coil | Coil | 14 | 45 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G08190.1 | vacuolar protein sorting 41. Might be involved in protein sorting to the vacuole. | 0 |
| RefSeq | XP_018833156.1 | vacuolar protein sorting-associated protein 41 homolog [Juglans regia] | 0 |
| P93231 | Vacuolar protein sorting-associated protein 41 homolog OS=Solanum lycopersicum OX=4081 GN=VPS41 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2I4FNC4 | Vacuolar protein sorting-associated protein 41 homolog OS=Juglans regia OX=51240 GN=LOC109000658 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg16502 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21201 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah011702 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g208980 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg11984, Sbi_jg46913 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg21202 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009543 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl80393, Sgl82854 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000013312, gene:ENSEOMG00000017795 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.6AG0009140, CQ.Regalona.r1.9AG0007540 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30057500 |
| Apiaceae | Apium graveolens | 3 | Ag10G00645, Ag11G04350, Ag2G01017 |
| Arecaceae | Cocos nucifera | 2 | COCNU_09G006340, scaffold008549G000140 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103723745 |
| Asparagaceae | Asparagus officinalis | 4 | AsparagusV1_03.3199.V1.1, AsparagusV1_06.1781.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G17663 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G08190.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006697m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g06840.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB04g031420.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1693 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1691 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno09g00270 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0239s00012.v1.0, Dusal.0239s00013.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g02540 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2346 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.802 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00012528, Pov_00026480 |
| Plumbaginaceae | Limonium bicolor | 5 | Lb0G37755, Lb3G19531, Lb3G19532, Lb3G19536, Lb3G20104 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.2687, BH09.2922, CH09.3133 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0299690, gene-QOZ80_4BG0330360 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0210930.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_047453 |
| Poaceae | Oryza coarctata | 3 | Oco08G001770, Oco23G004850, Oco24G004370 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g11880.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G280800 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0300186, Pt_Chr0300189, Pt_Chr0300196, Pt_Chr0303114 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr23G001090, Chr25G000840, Chr26G018200 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G941100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG076960, gene_TRIDC2BG084570 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G552000.1, TraesCS2B02G583300.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb043500_P001, Zm00001eb066510_P002 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-6178 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g22210 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.1566, evm.TU.LG15.1686 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc08g06150, gene.Posoc08g06170 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.46317.6, evm.TU.Scaffold_14_RagTag.839 ... |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-16597 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-5500, nbisL1-mrna-8042 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-17165, nbisL1-mrna-19139 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000022l.120, evm.TU.utg000025l.55 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00012204, Maker00016232 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-123, nbisL1-mrna-15901 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-10375, nbisL1-mrna-23791 |
| Salicaceae | Populus euphratica | 3 | populus_peu02499, populus_peu35355, populus_peu35397 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132600495, gene-LOC132604542 |
| Solanaceae | Solanum chilense | 2 | SOLCI003117800, SOLCI006548800 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107004792, gene-LOC107023568 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8588 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G1915 |
| Zosteraceae | Zostera marina | 6 | Zosma06g13390.v3.1, Zosma15g00030.v3.1, Zosma660g00010.v3.1 ... |