Basic Information
Locus ID:
Cgl05G1626
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr05 | 17328604 | 17336168 | - | Cgl05G1626 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.34 | 100,906.30 Da | 45.46 | 77.47 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15539 | PHD1_AIRE | 547 | 587 | 1.17865E-20 | - |
| Pfam | PF16135 | Tify domain binding domain | 481 | 529 | 9.9E-16 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 295 | 350 | 1.5E-15 | IPR032308 |
| Pfam | PF00628 | PHD-finger | 548 | 589 | 3.9E-8 | IPR019787 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 536 | 589 | 6.38E-17 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 788 | 891 | 6.18E-8 | IPR016181 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 633 | 702 | 3.77E-8 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 633 | 694 | 4.1E-11 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 534 | 616 | 2.4E-19 | IPR013083 |
| Gene3D | G3DSA:3.40.630.30 | - | 732 | 901 | 2.5E-7 | - |
| SMART | SM00249 | PHD_3 | 635 | 691 | 5.6E-4 | IPR001965 |
| SMART | SM00249 | PHD_3 | 547 | 588 | 4.3E-12 | IPR001965 |
| ProSiteProfiles | PS51186 | Gcn5-related N-acetyltransferase (GNAT) domain profile. | 742 | 894 | 9.313385 | IPR000182 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 545 | 590 | 10.2999 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 548 | 587 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 163 | 186 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 61 | 93 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 207 | 227 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27980.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_018844567.1 | uncharacterized protein LOC109008790 [Juglans regia] | 0 |
| Q6PDQ2 | Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus OX=10090 GN=Chd4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A660KMC0 | PHD-type domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_010138 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology