Basic Information
Locus ID:
Cgl05G0957
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr05 | 8846356 | 8861256 | + | Cgl05G0957 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.34 | 133,447.20 Da | 42.45 | 92.61 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13041 | PPR repeat family | 473 | 522 | 1.1E-11 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 200 | 245 | 1.8E-11 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 403 | 451 | 1.4E-16 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 543 | 590 | 5.6E-11 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 333 | 382 | 2.4E-14 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 165 | 194 | 0.27 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 130 | 159 | 0.21 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 302 | 330 | 0.042 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 269 | 292 | 0.072 | IPR002885 |
| SUPERFAMILY | SSF48452 | TPR-like | 1029 | 1151 | 5.31E-7 | IPR011990 |
| SUPERFAMILY | SSF81901 | HCP-like | 347 | 566 | 2.28E-6 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 885 | 932 | 3.31E-8 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 468 | 537 | 4.3E-19 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 995 | 1172 | 1.0E-11 | IPR011990 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 887 | 968 | 3.4E-9 | IPR013083 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 398 | 467 | 3.8E-22 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 126 | 296 | 3.7E-37 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 297 | 397 | 5.1E-27 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 538 | 596 | 4.1E-12 | IPR011990 |
| SMART | SM00184 | ring_2 | 891 | 925 | 0.0016 | IPR001841 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 406 | 440 | 7.4E-10 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 201 | 233 | 4.4E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 302 | 334 | 9.3E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 476 | 510 | 3.5E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 371 | 405 | 1.7E-8 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 234 | 267 | 1.1E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 130 | 162 | 8.4E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 337 | 368 | 9.7E-8 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 165 | 198 | 2.6E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 511 | 544 | 2.2E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 441 | 475 | 1.4E-8 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 546 | 579 | 9.0E-9 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 334 | 368 | 11.860184 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 509 | 543 | 12.649398 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 232 | 266 | 10.632519 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 404 | 438 | 12.769972 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 474 | 508 | 10.862706 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 197 | 231 | 11.268274 | IPR002885 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 891 | 925 | 11.486073 | IPR001841 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 162 | 196 | 9.339086 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 439 | 473 | 13.109773 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 369 | 403 | 12.057487 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 299 | 333 | 10.446177 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 544 | 578 | 12.386327 | IPR002885 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 907 | 916 | - | IPR017907 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54360.1 | zinc ion binding. | 0 |
| RefSeq | XP_023913460.1 | protein NCA1 [Quercus suber] | 0 |
| Q9M2V1 | Protein NCA1 OS=Arabidopsis thaliana OX=3702 GN=NCA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A660KRX7 | RING-type domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_010985 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg15973, jg31284 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_7107 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah006802, Ah006804 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g209770 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12040, Sbi_jg46961 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg21253 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009593 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl80448, Sgl82909 |
| Amaranthaceae | Chenopodium album | 7 | gene:ENSEOMG00000008611, gene:ENSEOMG00000028892 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0014210, CQ.Regalona.r1.4AG0014280 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30168710 |
| Apiaceae | Apium graveolens | 1 | Ag2G00188 |
| Arecaceae | Cocos nucifera | 2 | COCNU_04G011990, COCNU_16G005190 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103702200, gene-LOC103709685 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.781.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri11G21364, Ftri12G03745 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G54360.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10010421m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g08040.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB06g057400.2N, BniB08g068610.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G0959 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0957 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g12190 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0024s00045.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g18080, gene.Thate08g13470 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-8184 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2075 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00006872 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G12533, Lb2G12552 |
| Poaceae | Echinochloa crus-galli | 6 | AH02.1089, AH04.338, BH02.1023, BH04.333, CH02.1131 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0006300, gene-QOZ80_1BG0055020 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0231430.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_049152, gene-QYE76_049638 |
| Poaceae | Oryza coarctata | 2 | Oco01G000230, Oco02G000230 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g01420.2, LOC_Os02g55200.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G095600, gene-BS78_05G057500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0206639, Pt_Chr0206742 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr02G025520, Chr03G002610, Chr05G003250, Chr08G002460 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G142900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG009360, gene_TRIDC3BG013200 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G078500.1, TraesCS3B02G093400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb126920_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-32362, nbis-gene-7207 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g9799 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.652, evm.TU.LG09.1814 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc08g12580, gene.Posoc10g11460 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.133 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-7226 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2367 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-14452 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000005l.310 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00010292 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-283 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-21996 |
| Salicaceae | Populus euphratica | 2 | populus_peu04167, populus_peu34998 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132607379, gene-LOC132637098 |
| Solanaceae | Solanum chilense | 1 | SOLCI002815000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002385 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_13021 |
| Tamaricaceae | Tamarix chinensis | 2 | TC05G2437, TC06G0704 |
| Zosteraceae | Zostera marina | 1 | Zosma06g24400.v3.1 |