Basic Information
Locus ID:
Cgl05G0727
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Short Name:
LYK4
Description:
lysM domain receptor-like kinase 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr05 | 6578253 | 6589197 | - | Cgl05G0727 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.01 | 145,878.70 Da | 43.46 | 87.66 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00118 | LysM | 187 | 229 | 3.98944E-6 | IPR018392 |
| CDD | cd00118 | LysM | 791 | 833 | 1.82949E-5 | IPR018392 |
| Pfam | PF00069 | Protein kinase domain | 367 | 611 | 2.9E-39 | IPR000719 |
| Pfam | PF00069 | Protein kinase domain | 976 | 1213 | 2.5E-38 | IPR000719 |
| Pfam | PF01476 | LysM domain | 188 | 230 | 3.5E-8 | IPR018392 |
| Pfam | PF01476 | LysM domain | 792 | 834 | 7.3E-8 | IPR018392 |
| SUPERFAMILY | SSF54106 | LysM domain | 186 | 230 | 3.14E-6 | IPR036779 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 934 | 1215 | 4.92E-64 | IPR011009 |
| SUPERFAMILY | SSF54106 | LysM domain | 790 | 834 | 3.4E-6 | IPR036779 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 331 | 613 | 2.19E-65 | IPR011009 |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 187 | 232 | 5.6E-9 | IPR036779 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 930 | 1017 | 1.5E-12 | - |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 790 | 836 | 6.9E-9 | IPR036779 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 322 | 414 | 1.4E-13 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1018 | 1233 | 1.5E-51 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 415 | 623 | 2.0E-54 | - |
| SMART | SM00257 | LysM_2 | 791 | 834 | 1.6E-5 | IPR018392 |
| SMART | SM00257 | LysM_2 | 187 | 230 | 1.6E-6 | IPR018392 |
| SMART | SM00220 | serkin_6 | 351 | 617 | 4.6E-24 | IPR000719 |
| SMART | SM00257 | LysM_2 | 725 | 771 | 5.0 | IPR018392 |
| SMART | SM00220 | serkin_6 | 954 | 1219 | 1.4E-26 | IPR000719 |
| SMART | SM00257 | LysM_2 | 121 | 167 | 3.4 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 921 | 1223 | 32.696903 | IPR000719 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 790 | 833 | 12.012434 | IPR018392 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 186 | 229 | 11.318642 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 330 | 621 | 33.007851 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 841 | 859 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 237 | 255 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1307 | 1326 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 236 | 258 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 840 | 861 | - | - |
| Coils | Coil | Coil | 542 | 562 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G23770.1 | protein kinase family protein / peptidoglycan-binding LysM domain-containing protein. | 0 |
| RefSeq | XP_042975237.1 | lysM domain receptor-like kinase 4 [Carya illinoinensis] | 0 |
| O64825 | LysM domain receptor-like kinase 4 OS=Arabidopsis thaliana OX=3702 GN=LYK4 PE=1 SV=1 | 0 | |
| TrEMBL | F6GX02 | LysM domain receptor-like kinase 4 OS=Vitis vinifera OX=29760 GN=VIT_04s0023g01080 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology