Basic Information
Locus ID:
Cgl05G0404
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
Tetratricopeptide repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr05 | 3534756 | 3540162 | - | Cgl05G0404 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.84 | 74,011.71 Da | 51.46 | 87.33 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 398 | 656 | 1.2E-41 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 375 | 660 | 9.58E-68 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 469 | 662 | 6.8E-48 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 366 | 468 | 1.1E-25 | - |
| SMART | SM00220 | serkin_6 | 396 | 660 | 1.0E-33 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 396 | 662 | 35.848785 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 514 | 526 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 402 | 423 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 204 | 235 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 107 | 135 | - | - |
| Coils | Coil | Coil | 258 | 278 | - | - |
| Coils | Coil | Coil | 300 | 330 | - | - |
| Coils | Coil | Coil | 342 | 369 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_041002265.1 | U-box domain-containing protein 33-like [Juglans microcarpa x Juglans regia] | 0 |
| Q8GUH1 | U-box domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=PUB33 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6A1VQU2 | U-box domain-containing protein 33 OS=Morella rubra OX=262757 GN=CJ030_MR5G000865 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Casuarinaceae | Casuarina equisetifolia | 5 | Ceq04G0093, Ceq05G0389, Ceq05G0391, Ceq05G0392, Ceq05G0402 |
| Casuarinaceae | Casuarina glauca | 6 | Cgl04G0111, Cgl04G0118, Cgl04G0132, Cgl04G0141, Cgl05G0404 ... |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2803 |