Basic Information
Locus ID:
Cgl04G2585
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 32211180 | 32220556 | + | Cgl04G2585 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.47 | 115,297.80 Da | 36.29 | 84.08 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 835 | 870 | 0.043 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 379 | 415 | 1.5E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 278 | 593 | 1.73E-39 | IPR036322 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 452 | 1017 | 2.59E-36 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 471 | 617 | 9.8E-8 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 672 | 1023 | 5.3E-28 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 174 | 470 | 1.4E-32 | IPR015943 |
| SMART | SM00320 | WD40_4 | 268 | 307 | 0.86 | IPR001680 |
| SMART | SM00668 | ctlh | 1 | 55 | 6.2E-7 | IPR006595 |
| SMART | SM00320 | WD40_4 | 924 | 963 | 7.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 788 | 828 | 6.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 831 | 870 | 4.0E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 418 | 459 | 0.026 | IPR001680 |
| SMART | SM00320 | WD40_4 | 374 | 415 | 3.9E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 324 | 368 | 19.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 750 | 785 | 26.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 462 | 505 | 130.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 972 | 1015 | 200.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 508 | 547 | 31.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 838 | 870 | 10.442869 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 1 | 55 | 11.455101 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 381 | 419 | 8.992876 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 381 | 424 | 11.44416 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 838 | 879 | 12.780889 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 402 | 416 | - | IPR019775 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80490.1 | TOPLESS-related 1. | 0 |
| RefSeq | XP_042989911.1 | protein TOPLESS-like [Carya illinoinensis] | 0 |
| Q0WV90 | Topless-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=TPR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A2N9EEJ2 | Topless-related protein 1-like OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS973 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology