Basic Information
Locus ID:
Cgl04G2584
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
Topless-related protein 1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 32198814 | 32206840 | - | Cgl04G2584 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.52 | 125,578.57 Da | 37.05 | 83.97 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF17814 | LisH-like dimerisation domain | 34 | 62 | 3.3E-5 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 475 | 509 | 5.3E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 907 | 939 | 0.024 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 825 | 1107 | 3.14E-33 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 361 | 712 | 2.65E-34 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 349 | 561 | 1.3E-23 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 562 | 797 | 1.6E-10 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 818 | 961 | 4.1E-18 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 962 | 1129 | 8.1E-6 | IPR015943 |
| SMART | SM00320 | WD40_4 | 468 | 509 | 0.0018 | IPR001680 |
| SMART | SM00320 | WD40_4 | 817 | 854 | 90.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 678 | 716 | 390.0 | IPR001680 |
| SMART | SM00667 | Lish | 33 | 65 | 1.6E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 556 | 599 | 69.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 512 | 553 | 0.025 | IPR001680 |
| SMART | SM00320 | WD40_4 | 602 | 642 | 34.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 366 | 405 | 13.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 991 | 1032 | 0.85 | IPR001680 |
| SMART | SM00320 | WD40_4 | 857 | 897 | 5.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 900 | 939 | 0.0011 | IPR001680 |
| SMART | SM00668 | ctlh | 63 | 121 | 5.2E-11 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 475 | 518 | 10.374778 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 64 | 121 | 12.379125 | IPR006595 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 33 | 65 | 10.395773 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 907 | 939 | 9.309238 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 907 | 948 | 11.510997 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 496 | 510 | - | IPR019775 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80490.1 | TOPLESS-related 1. | 0 |
| RefSeq | XP_050268371.1 | topless-related protein 1-like isoform X1 [Quercus robur] | 0 |
| Q0WV90 | Topless-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=TPR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A5N6R984 | Topless-related protein 1-like OS=Carpinus fangiana OX=176857 GN=FH972_013118 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology