Basic Information
Locus ID:
Cgl04G2576
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
Synaptotagmin-like mitochondrial-lipid-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 32130663 | 32137591 | + | Cgl04G2576 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.59 | 63,323.90 Da | 30.00 | 102.09 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 259 | 361 | 1.9252E-25 | - |
| CDD | cd00030 | C2 | 437 | 537 | 1.31245E-25 | - |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 66 | 243 | 1.3E-14 | IPR039010 |
| Pfam | PF00168 | C2 domain | 257 | 361 | 2.4E-23 | IPR000008 |
| Pfam | PF00168 | C2 domain | 435 | 537 | 5.2E-25 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 255 | 386 | 4.41E-30 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 431 | 554 | 4.56E-31 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 253 | 388 | 2.1E-31 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 418 | 553 | 4.0E-34 | IPR035892 |
| SMART | SM00239 | C2_3c | 436 | 534 | 6.5E-23 | IPR000008 |
| SMART | SM00239 | C2_3c | 258 | 358 | 3.4E-23 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 416 | 535 | 21.287294 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 60 | 244 | 29.857637 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 238 | 359 | 21.017429 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 500 | 508 | 1.5E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 478 | 491 | 1.5E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 452 | 464 | 1.5E-6 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_041019903.1 | synaptotagmin-4 isoform X1 [Juglans microcarpa x Juglans regia] | 0 |
| A0JJX5 | Synaptotagmin-4 OS=Arabidopsis thaliana OX=3702 GN=SYT4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2I4ES94 | synaptotagmin-4 OS=Juglans regia OX=51240 GN=LOC108992232 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology