Basic Information
Locus ID:
Cgl04G2512
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 31507773 | 31511347 | - | Cgl04G2512 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.27 | 85,105.95 Da | 40.13 | 78.22 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 418 | 446 | 7.5E-4 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 354 | 375 | 0.3 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 449 | 477 | 0.0037 | IPR002885 |
| Pfam | PF14432 | DYW family of nucleic acid deaminases | 622 | 726 | 1.7E-25 | IPR032867 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 349 | 510 | 1.2E-29 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 449 | 481 | 8.1E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 418 | 446 | 0.003 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 415 | 445 | 9.097937 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 446 | 480 | 10.39137 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32450.1 | Pentatricopeptide repeat (PPR) superfamily protein. | 0 |
| RefSeq | XP_042992258.1 | pentatricopeptide repeat-containing protein At4g32450, mitochondrial-like [Carya illinoinensis] | 0 |
| Q9SUU7 | Pentatricopeptide repeat-containing protein At4g32450, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H63 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N6R6X7 | DYW_deaminase domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_013179 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology